Difference between revisions of "BIOTINLIG-RXN"

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(Created page with "Category:reaction == Reaction RIBULP3EPIM-RXN == * common-name: ** ribulose-phosphate 3-epimerase * ec-number: ** [http://enzyme.expasy.org/EC/5.1.3.1 ec-5.1.3.1] * direct...")
 
(Created page with "Category:reaction == Reaction BIOTINLIG-RXN == * common-name: ** biotin-[acetyl-coa-carboxylase] ligase * ec-number: ** [http://enzyme.expasy.org/EC/6.3.4.15 ec-6.3.4.15]...")
 
(3 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RIBULP3EPIM-RXN ==
+
== Reaction BIOTINLIG-RXN ==
 
* common-name:
 
* common-name:
−
** ribulose-phosphate 3-epimerase
+
** biotin-[acetyl-coa-carboxylase] ligase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.1.3.1 ec-5.1.3.1]
+
** [http://enzyme.expasy.org/EC/6.3.4.15 ec-6.3.4.15]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[RIBULOSE-5P]][c] '''<=>''' 1 [[XYLULOSE-5-PHOSPHATE]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[BCCP-L-lysine]][c] '''+''' 1 [[BIOTIN]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[BCCP-biotin-L-lysine]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_07361]]
+
* Gene: [[E_subulatus_03807]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[E_subulatus_16341]]
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[E_subulatus_18114]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[E_subulatus_03808]]
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
* [[PWY0-1264]], biotin-carboxyl carrier protein assembly:
−
** '''11''' reactions found over '''12''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
** '''12''' reactions found over '''13''' reactions in the full pathway
 
−
** '''12''' reactions found over '''13''' reactions in the full pathway
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
** '''11''' reactions found over '''15''' reactions in the full pathway
 
−
** '''11''' reactions found over '''15''' reactions in the full pathway
 
−
** '''14''' reactions found over '''18''' reactions in the full pathway
 
−
** '''14''' reactions found over '''18''' reactions in the full pathway
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* DB : RHEA
+
* METANETX-RXN : MNXR115739
−
* ID : 13677
+
* UNIPROT:
−
{{#set: common-name=ribulose-phosphate 3-epimerase}}
+
** [http://www.uniprot.org/uniprot/P06709 P06709]
−
{{#set: ec-number=ec-5.1.3.1}}
+
** [http://www.uniprot.org/uniprot/Q9PJ27 Q9PJ27]
−
{{#set: direction=reversible}}
+
** [http://www.uniprot.org/uniprot/Q9CEQ6 Q9CEQ6]
−
{{#set: nb gene associated=2}}
+
** [http://www.uniprot.org/uniprot/Q9CED9 Q9CED9]
−
{{#set: nb pathway associated=8}}
+
** [http://www.uniprot.org/uniprot/Q9JWI7 Q9JWI7]
−
{{#set: reconstruction category=annotation|orthology}}
+
** [http://www.uniprot.org/uniprot/P48445 P48445]
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
** [http://www.uniprot.org/uniprot/P72816 P72816]
 +
{{#set: common-name=biotin-[acetyl-coa-carboxylase] ligase}}
 +
{{#set: ec-number=ec-6.3.4.15}}
 +
{{#set: direction=left-to-right}}
 +
{{#set: nb gene associated=3}}
 +
{{#set: nb pathway associated=1}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}
+
{{#set: reconstruction source=ectocarpus_subulatus}}

Latest revision as of 19:40, 17 March 2021

Reaction BIOTINLIG-RXN

  • common-name:
    • biotin-[acetyl-coa-carboxylase] ligase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-1264, biotin-carboxyl carrier protein assembly:
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

Property "Common-name" (as page type) with input value "biotin-[acetyl-coa-carboxylase] ligase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.





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