Difference between revisions of "3.1.26.3-RXN"

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(Created page with "Category:reaction == Reaction ALANINE--TRNA-LIGASE-RXN == * common-name: ** alanine—trna ligase * ec-number: ** [http://enzyme.expasy.org/EC/6.1.1.7 ec-6.1.1.7] * di...")
(Created page with "Category:reaction == Reaction 3.1.26.3-RXN == * common-name: ** ribonuclease iii ** endoribonuclease * ec-number: ** [http://enzyme.expasy.org/EC/3.1.26.3 ec-3.1.26.3] * d...")
 
(One intermediate revision by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ALANINE--TRNA-LIGASE-RXN ==
+
== Reaction 3.1.26.3-RXN ==
 
* common-name:
 
* common-name:
−
** alanine—trna ligase
+
** ribonuclease iii
 +
** endoribonuclease
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.7 ec-6.1.1.7]
+
** [http://enzyme.expasy.org/EC/3.1.26.3 ec-3.1.26.3]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ALA-tRNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[L-ALPHA-ALANINE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-ALA-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[RNASE-III-MRNA-PROCESSING-SUBSTRATE]][c] '''+''' 2 [[WATER]][c] '''=>''' 1 [[RNASE-III-PROCESSING-PRODUCT-MRNA]][c] '''+''' 2 [[mRNA-Fragments]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_12130]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[E_subulatus_13772]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_21769]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_21384]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_22872]]
+
* Gene: [[E_subulatus_21768]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_21385]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_18802]]
+
* Gene: [[E_subulatus_21387]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_20327]]
+
* Gene: [[E_subulatus_12947]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_21767]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_21386]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_12129]]
+
* Gene: [[E_subulatus_12946]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_21383]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_12945]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_19687]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_19686]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_19688]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_13771]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging:
 
−
** '''21''' reactions found over '''21''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR115277
−
* METANETX-RXN : MNXR115678
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12541 12541]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03038 R03038]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P56452 P56452]
+
** [http://www.uniprot.org/uniprot/Q9PM40 Q9PM40]
−
** [http://www.uniprot.org/uniprot/O27718 O27718]
+
** [http://www.uniprot.org/uniprot/P51833 P51833]
−
** [http://www.uniprot.org/uniprot/O34526 O34526]
+
** [http://www.uniprot.org/uniprot/Q9CHD0 Q9CHD0]
−
** [http://www.uniprot.org/uniprot/P47534 P47534]
+
** [http://www.uniprot.org/uniprot/Q9JVD3 Q9JVD3]
−
** [http://www.uniprot.org/uniprot/O58035 O58035]
+
** [http://www.uniprot.org/uniprot/P44441 P44441]
−
** [http://www.uniprot.org/uniprot/Q9PI05 Q9PI05]
+
** [http://www.uniprot.org/uniprot/P0A7Y0 P0A7Y0]
−
** [http://www.uniprot.org/uniprot/Q9JTG4 Q9JTG4]
+
** [http://www.uniprot.org/uniprot/P09155 P09155]
−
** [http://www.uniprot.org/uniprot/Q57984 Q57984]
+
** [http://www.uniprot.org/uniprot/Q52698 Q52698]
−
** [http://www.uniprot.org/uniprot/O51238 O51238]
+
** [http://www.uniprot.org/uniprot/Q49034 Q49034]
−
** [http://www.uniprot.org/uniprot/Q9CEW0 Q9CEW0]
+
** [http://www.uniprot.org/uniprot/O69469 O69469]
−
** [http://www.uniprot.org/uniprot/O83980 O83980]
+
{{#set: common-name=ribonuclease iii|endoribonuclease}}
−
** [http://www.uniprot.org/uniprot/Q9X1B6 Q9X1B6]
+
{{#set: ec-number=ec-3.1.26.3}}
−
** [http://www.uniprot.org/uniprot/Q9ZJY5 Q9ZJY5]
 
−
** [http://www.uniprot.org/uniprot/O67323 O67323]
 
−
** [http://www.uniprot.org/uniprot/Q9ZCA4 Q9ZCA4]
 
−
** [http://www.uniprot.org/uniprot/Q9Z714 Q9Z714]
 
−
** [http://www.uniprot.org/uniprot/P49588 P49588]
 
−
** [http://www.uniprot.org/uniprot/P43815 P43815]
 
−
** [http://www.uniprot.org/uniprot/P50475 P50475]
 
−
** [http://www.uniprot.org/uniprot/P24075 P24075]
 
−
** [http://www.uniprot.org/uniprot/P27866 P27866]
 
−
** [http://www.uniprot.org/uniprot/P35029 P35029]
 
−
** [http://www.uniprot.org/uniprot/P40825 P40825]
 
−
** [http://www.uniprot.org/uniprot/P75368 P75368]
 
−
** [http://www.uniprot.org/uniprot/Q48976 Q48976]
 
−
** [http://www.uniprot.org/uniprot/P00957 P00957]
 
−
** [http://www.uniprot.org/uniprot/P21894 P21894]
 
−
** [http://www.uniprot.org/uniprot/O50189 O50189]
 
−
</div>
 
−
{{#set: common-name=alanine&mdash;trna ligase}}
 
−
{{#set: ec-number=ec-6.1.1.7}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=5}}
+
{{#set: nb gene associated=16}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=0}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}

Latest revision as of 19:41, 17 March 2021

Reaction 3.1.26.3-RXN

  • common-name:
    • ribonuclease iii
    • endoribonuclease
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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