Difference between revisions of "XMPXAN-RXN"

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(Created page with "Category:reaction == Reaction PGLYCDEHYDROG-RXN == * common-name: ** d-3-phosphoglycerate dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.95 ec-1.1.1.95]...")
(Created page with "Category:reaction == Reaction XMPXAN-RXN == * common-name: ** xmp phosphohydrolase ** 5'-nucleotidase * ec-number: ** [http://enzyme.expasy.org/EC/3.1.3.5 ec-3.1.3.5] * di...")
 
(One intermediate revision by the same user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PGLYCDEHYDROG-RXN ==
+
== Reaction XMPXAN-RXN ==
 
* common-name:
 
* common-name:
−
** d-3-phosphoglycerate dehydrogenase
+
** xmp phosphohydrolase
 +
** 5'-nucleotidase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.95 ec-1.1.1.95]
+
** [http://enzyme.expasy.org/EC/3.1.3.5 ec-3.1.3.5]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[G3P]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[3-P-HYDROXYPYRUVATE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[WATER]][c] '''+''' 1 [[XANTHOSINE-5-PHOSPHATE]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[XANTHOSINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_01138]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[E_subulatus_02464]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[E_subulatus_02465]]
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[E_subulatus_19983]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[E_subulatus_19982]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_10902]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_17313]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_17477]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_13217]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_10901]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_02463]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_17314]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[SERSYN-PWY]], L-serine biosynthesis I:
+
* [[PWY-6596]], adenosine nucleotides degradation I:
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''6''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-8010]], L-cysteine biosynthesis IX (Trichomonas vaginalis):
+
* [[PWY-5695]], inosine 5'-phosphate degradation:
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR102527
+
* METANETX-RXN : MNXR102029
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12644 12644]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28531 28531]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01513 R01513]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02719 R02719]
−
* UNIPROT:
+
{{#set: common-name=5'-nucleotidase|xmp phosphohydrolase}}
−
** [http://www.uniprot.org/uniprot/Q58424 Q58424]
+
{{#set: ec-number=ec-3.1.3.5}}
−
** [http://www.uniprot.org/uniprot/P43885 P43885]
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/P35136 P35136]
+
{{#set: nb gene associated=9}}
−
** [http://www.uniprot.org/uniprot/Q9PP40 Q9PP40]
 
−
** [http://www.uniprot.org/uniprot/P0A9T0 P0A9T0]
 
−
** [http://www.uniprot.org/uniprot/P40510 P40510]
 
−
** [http://www.uniprot.org/uniprot/P40054 P40054]
 
−
** [http://www.uniprot.org/uniprot/O49485 O49485]
 
−
** [http://www.uniprot.org/uniprot/P87228 P87228]
 
−
** [http://www.uniprot.org/uniprot/O04130 O04130]
 
−
{{#set: common-name=d-3-phosphoglycerate dehydrogenase}}
 
−
{{#set: ec-number=ec-1.1.1.95}}
 
−
{{#set: direction=reversible}}
 
−
{{#set: nb gene associated=3}}
 
 
{{#set: nb pathway associated=2}}
 
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}
+
{{#set: reconstruction source=ectocarpus_subulatus}}

Latest revision as of 19:41, 17 March 2021

Reaction XMPXAN-RXN

  • common-name:
    • xmp phosphohydrolase
    • 5'-nucleotidase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6596, adenosine nucleotides degradation I:
    • 6 reactions found over 8 reactions in the full pathway
  • PWY-5695, inosine 5'-phosphate degradation:
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR102029
  • RHEA:
  • LIGAND-RXN:





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