Difference between revisions of "RXN-12878"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction 4.2.1.61-RXN == * common-name: ** (3r)-3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase * ec-number: ** [http://enzyme.expasy.org/EC/2.3...")
(Created page with "Category:reaction == Reaction RXN-12878 == * common-name: ** glutamate dehydrogenase (ferredoxin) * direction: ** left-to-right == Reaction formula == * 1 GLT[c] '''+'...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
== Reaction 4.2.1.61-RXN ==
+
== Reaction RXN-12878 ==
 
* common-name:
 
* common-name:
** (3r)-3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase
+
** glutamate dehydrogenase (ferredoxin)
* ec-number:
 
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
 
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 
** [http://enzyme.expasy.org/EC/4.2.1.59 ec-4.2.1.59]
 
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
* synonymous:
 
** β-hydroxypalmitoyl thioester dehydratase
 
** (3r)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase (hexadec-2-enoyl-[acyl-carrier protein]-forming)
 
** β-hydroxypalmitoyl-acyl carrier protein dehydrase
 
** (3r)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase
 
** d-3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase
 
** β-hydroxypalmityl-acp dehydrase
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[R-3-Hydroxypalmitoyl-ACPs]][c] '''=>''' 1 [[2-Hexadecenoyl-ACPs]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[GLT]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 2 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[E_subulatus_18602]]
+
* Gene: [[E_subulatus_13550]]
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_15037]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_15038]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-5971]], palmitate biosynthesis (type II fatty acid synthase):
 
** '''30''' reactions found over '''31''' reactions in the full pathway
 
* [[PWY-5994]], palmitate biosynthesis (type I fatty acid synthase):
 
** '''30''' reactions found over '''31''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
* METANETX-RXN : MNXR115600
+
* METANETX-RXN : MNXR113463
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32192 32192]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
** [http://www.genome.jp/dbget-bin/www_bget?R04462 R04462]
+
** [http://www.genome.jp/dbget-bin/www_bget?R10086 R10086]
* UNIPROT:
+
{{#set: common-name=glutamate dehydrogenase (ferredoxin)}}
** [http://www.uniprot.org/uniprot/P49327 P49327]
 
** [http://www.uniprot.org/uniprot/P07149 P07149]
 
** [http://www.uniprot.org/uniprot/P12276 P12276]
 
** [http://www.uniprot.org/uniprot/P12785 P12785]
 
{{#set: common-name=(3r)-3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase}}
 
{{#set: ec-number=ec-4.2.1.59|ec-2.3.1.85|ec-2.3.1.86}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: synonymous=β-hydroxypalmitoyl thioester dehydratase|(3r)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase|(3r)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase (hexadec-2-enoyl-[acyl-carrier protein]-forming)|β-hydroxypalmityl-acp dehydrase|β-hydroxypalmitoyl-acyl carrier protein dehydrase|d-3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase}}
+
{{#set: nb gene associated=1}}
{{#set: nb gene associated=3}}
+
{{#set: nb pathway associated=0}}
{{#set: nb pathway associated=2}}
 
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}

Latest revision as of 19:41, 17 March 2021

Reaction RXN-12878

  • common-name:
    • glutamate dehydrogenase (ferredoxin)
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR113463
  • RHEA:
  • LIGAND-RXN: