Difference between revisions of "ExchangeSeed-UDP"

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(Created page with "Category:reaction == Reaction METHYLCROTONYL-COA-CARBOXYLASE-RXN == * common-name: ** 3-methylcrotonyl-coa carboxylase * ec-number: ** [http://enzyme.expasy.org/EC/6.4.1.4...")
(Created page with "Category:reaction == Reaction ExchangeSeed-UDP == * direction: ** reversible == Reaction formula == * 1.0 UDP[C-BOUNDARY] '''<=>''' 1.0 UDP[e] == Gene(s) associate...")
 
(One intermediate revision by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction METHYLCROTONYL-COA-CARBOXYLASE-RXN ==
+
== Reaction ExchangeSeed-UDP ==
* common-name:
 
** 3-methylcrotonyl-coa carboxylase
 
* ec-number:
 
** [http://enzyme.expasy.org/EC/6.4.1.4 ec-6.4.1.4]
 
 
* direction:
 
* direction:
** left-to-right
+
** reversible
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[3-METHYL-CROTONYL-COA]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[HCO3]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[TRANS-3-METHYL-GLUTACONYL-COA]][c]
+
* 1.0 [[UDP]][C-BOUNDARY] '''<=>''' 1.0 [[UDP]][e]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* Gene: [[E_subulatus_08408]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_21383]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[E_subulatus_21382]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_21386]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_21387]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_21384]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_21385]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[LEU-DEG2-PWY]], L-leucine degradation I:
 
** '''6''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
+
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
* METANETX-RXN : MNXR101411
+
{{#set: direction=reversible}}
* RHEA:
+
{{#set: nb gene associated=0}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13590 13590]
+
{{#set: nb pathway associated=0}}
* LIGAND-RXN:
+
{{#set: reconstruction category=manual}}
** [http://www.genome.jp/dbget-bin/www_bget?R04138 R04138]
+
{{#set: reconstruction tool=curation}}
* UNIPROT:
+
{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
** [http://www.uniprot.org/uniprot/Q40121 Q40121]
+
{{#set: reconstruction source=import_from_medium}}
** [http://www.uniprot.org/uniprot/Q42777 Q42777]
 
{{#set: common-name=3-methylcrotonyl-coa carboxylase}}
 
{{#set: ec-number=ec-6.4.1.4}}
 
{{#set: direction=left-to-right}}
 
{{#set: nb gene associated=7}}
 
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}
 

Latest revision as of 19:41, 17 March 2021

Reaction ExchangeSeed-UDP

  • direction:
    • reversible

Reaction formula

  • 1.0 UDP[C-BOUNDARY] <=> 1.0 UDP[e]

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links