|
|
| Line 1: |
Line 1: |
| | [[Category:reaction]] | | [[Category:reaction]] |
| − | == Reaction BIOTIN-CARBOXYL-RXN == | + | == Reaction ExchangeSeed-UDP == |
| − | * common-name:
| |
| − | ** biotin carboxylase
| |
| − | * ec-number:
| |
| − | ** [http://enzyme.expasy.org/EC/6.3.4.14 ec-6.3.4.14]
| |
| | * direction: | | * direction: |
| − | ** left-to-right | + | ** reversible |
| | == Reaction formula == | | == Reaction formula == |
| − | * 1 [[ATP]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[biotin-L-lysine-in-BCCP-dimers]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[carboxybiotin-L-lysine-in-BCCP-dimers]][c] | + | * 1.0 [[UDP]][C-BOUNDARY] '''<=>''' 1.0 [[UDP]][e] |
| | == Gene(s) associated with this reaction == | | == Gene(s) associated with this reaction == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| |
| − | * Gene: [[E_subulatus_04286]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[E_subulatus_21382]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | * Gene: [[E_subulatus_04285]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[E_subulatus_21148]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[E_subulatus_21387]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | * Gene: [[E_subulatus_05704]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[E_subulatus_21386]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | * Gene: [[E_subulatus_22691]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[E_subulatus_21384]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | * Gene: [[E_subulatus_21151]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[E_subulatus_21150]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[E_subulatus_08408]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[E_subulatus_21149]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[E_subulatus_05705]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[E_subulatus_21385]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | * Gene: [[E_subulatus_21383]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | </div>
| |
| | == Pathway(s) == | | == Pathway(s) == |
| − | * [[PWY-5744]], glyoxylate assimilation:
| |
| − | ** '''3''' reactions found over '''13''' reactions in the full pathway
| |
| − | * [[PWY0-1264]], biotin-carboxyl carrier protein assembly:
| |
| − | ** '''4''' reactions found over '''4''' reactions in the full pathway
| |
| − | * [[PWY-5743]], 3-hydroxypropanoate cycle:
| |
| − | ** '''6''' reactions found over '''13''' reactions in the full pathway
| |
| − | * [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle:
| |
| − | ** '''9''' reactions found over '''18''' reactions in the full pathway
| |
| | == Reconstruction information == | | == Reconstruction information == |
| − | * category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a | + | * category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment |
| | == External links == | | == External links == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| + | {{#set: direction=reversible}} |
| − | * METANETX-RXN : MNXR115738
| + | {{#set: nb gene associated=0}} |
| − | * RHEA:
| + | {{#set: nb pathway associated=0}} |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13502 13502]
| + | {{#set: reconstruction category=manual}} |
| − | * LIGAND-RXN:
| + | {{#set: reconstruction tool=curation}} |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R04385 R04385]
| + | {{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}} |
| − | * UNIPROT:
| + | {{#set: reconstruction source=import_from_medium}} |
| − | ** [http://www.uniprot.org/uniprot/Q06862 Q06862]
| |
| − | ** [http://www.uniprot.org/uniprot/O67483 O67483]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9CHF3 Q9CHF3]
| |
| − | ** [http://www.uniprot.org/uniprot/Q58626 Q58626]
| |
| − | ** [http://www.uniprot.org/uniprot/P43873 P43873]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9PN09 Q9PN09]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9JW07 Q9JW07]
| |
| − | ** [http://www.uniprot.org/uniprot/P24182 P24182]
| |
| − | ** [http://www.uniprot.org/uniprot/O04983 O04983]
| |
| − | ** [http://www.uniprot.org/uniprot/O81273 O81273]
| |
| − | ** [http://www.uniprot.org/uniprot/Q42777 Q42777]
| |
| − | ** [http://www.uniprot.org/uniprot/Q39825 Q39825]
| |
| − | ** [http://www.uniprot.org/uniprot/O23960 O23960]
| |
| − | ** [http://www.uniprot.org/uniprot/O52602 O52602]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9R9I4 Q9R9I4]
| |
| − | </div>
| |
| − | {{#set: common-name=biotin carboxylase}}
| |
| − | {{#set: ec-number=ec-6.3.4.14}}
| |
| − | {{#set: direction=left-to-right}} | |
| − | {{#set: nb gene associated=16}} | |
| − | {{#set: nb pathway associated=4}} | |
| − | {{#set: reconstruction category=annotation}} | |
| − | {{#set: reconstruction tool=pathwaytools}} | |
| − | {{#set: reconstruction comment=n.a}} | |
| − | {{#set: reconstruction source=ectocarpus_subulatus}} | |
