Difference between revisions of "IPPISOM-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction RXN-16637 == * common-name: ** aminoacyl-trna hydrolase * ec-number: ** [http://enzyme.expasy.org/EC/3.1.1.29 ec-3.1.1.29] * direction: ** le...")
(Created page with "Category:reaction == Reaction IPPISOM-RXN == * common-name: ** isopentenyl-diphosphate delta-isomerase * ec-number: ** [http://enzyme.expasy.org/EC/5.3.3.2 ec-5.3.3.2] * d...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-16637 ==
+
== Reaction IPPISOM-RXN ==
 
* common-name:
 
* common-name:
−
** aminoacyl-trna hydrolase
+
** isopentenyl-diphosphate delta-isomerase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.1.29 ec-3.1.1.29]
+
** [http://enzyme.expasy.org/EC/5.3.3.2 ec-5.3.3.2]
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Charged-CYS-tRNAs]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CYS]][c] '''+''' 1 [[CYS-tRNAs]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[DELTA3-ISOPENTENYL-PP]][c] '''<=>''' 1 [[CPD-4211]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[E_subulatus_00110]]
−
* Gene: [[E_subulatus_02643]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_21089]]
+
* Gene: [[E_subulatus_00109]]
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_21087]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_21088]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_04209]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_02644]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_04210]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_21090]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_02642]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
== Pathway(s)  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I:
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7560]], methylerythritol phosphate pathway II:
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7391]], isoprene biosynthesis II (engineered):
 +
** '''7''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6174]], mevalonate pathway II (haloarchaea):
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7524]], mevalonate pathway III (Thermoplasma):
 +
** '''4''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-922]], mevalonate pathway I (eukaryotes and bacteria):
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7102]], bisabolene biosynthesis (engineered):
 +
** '''2''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6859]], all-trans-farnesol biosynthesis:
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis:
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6383]], mono-trans, poly-cis decaprenyl phosphate biosynthesis:
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 
</div>
 
</div>
−
== Pathway(s)  ==
 
−
* [[PWY-6308]], L-cysteine biosynthesis II (tRNA-dependent):
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR120256
+
* METANETX-RXN : MNXR100796
−
{{#set: common-name=aminoacyl-trna hydrolase}}
+
* RHEA:
−
{{#set: ec-number=ec-3.1.1.29}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23287 23287]
−
{{#set: direction=left-to-right}}
+
* LIGAND-RXN:
−
{{#set: nb gene associated=9}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01123 R01123]
−
{{#set: nb pathway associated=1}}
+
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P15496 P15496]
 +
** [http://www.uniprot.org/uniprot/Q10132 Q10132]
 +
** [http://www.uniprot.org/uniprot/Q38929 Q38929]
 +
** [http://www.uniprot.org/uniprot/Q42553 Q42553]
 +
** [http://www.uniprot.org/uniprot/P93355 P93355]
 +
** [http://www.uniprot.org/uniprot/O81691 O81691]
 +
** [http://www.uniprot.org/uniprot/Q9SAY0 Q9SAY0]
 +
** [http://www.uniprot.org/uniprot/O81660 O81660]
 +
** [http://www.uniprot.org/uniprot/O81659 O81659]
 +
{{#set: common-name=isopentenyl-diphosphate delta-isomerase}}
 +
{{#set: ec-number=ec-5.3.3.2}}
 +
{{#set: direction=reversible}}
 +
{{#set: nb gene associated=2}}
 +
{{#set: nb pathway associated=10}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}

Latest revision as of 19:41, 17 March 2021

Reaction IPPISOM-RXN

  • common-name:
    • isopentenyl-diphosphate delta-isomerase
  • ec-number:
  • direction:
    • reversible

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • NONMEVIPP-PWY, methylerythritol phosphate pathway I:
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-7560, methylerythritol phosphate pathway II:
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-7391, isoprene biosynthesis II (engineered):
    • 7 reactions found over 8 reactions in the full pathway
  • PWY-6174, mevalonate pathway II (haloarchaea):
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-7524, mevalonate pathway III (Thermoplasma):
    • 4 reactions found over 8 reactions in the full pathway
  • PWY-922, mevalonate pathway I (eukaryotes and bacteria):
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-7102, bisabolene biosynthesis (engineered):
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-6859, all-trans-farnesol biosynthesis:
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-5123, trans, trans-farnesyl diphosphate biosynthesis:
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-6383, mono-trans, poly-cis decaprenyl phosphate biosynthesis:
    • 2 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.genouest.org//esubgem/index.php?title=IPPISOM-RXN&oldid=52236"