Difference between revisions of "RXN-14116"

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(Created page with "Category:reaction == Reaction IPPISOM-RXN == * common-name: ** isopentenyl-diphosphate delta-isomerase * ec-number: ** [http://enzyme.expasy.org/EC/5.3.3.2 ec-5.3.3.2] * d...")
 
(Created page with "Category:reaction == Reaction RXN-14116 == * common-name: ** l-glutamate γ-semialdehyde dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.2.1.88 ec-1.2.1....")
 
(3 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction IPPISOM-RXN ==
+
== Reaction RXN-14116 ==
 
* common-name:
 
* common-name:
−
** isopentenyl-diphosphate delta-isomerase
+
** l-glutamate γ-semialdehyde dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.3.3.2 ec-5.3.3.2]
+
** [http://enzyme.expasy.org/EC/1.2.1.88 ec-1.2.1.88]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DELTA3-ISOPENTENYL-PP]][c] '''<=>''' 1 [[CPD-4211]][c]
+
* 1 [[L-GLUTAMATE_GAMMA-SEMIALDEHYDE]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[GLT]][c] '''+''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_00110]]
+
* Gene: [[E_subulatus_00116]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_00109]]
+
* Gene: [[E_subulatus_00119]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_00117]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_00121]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_00118]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_00120]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PROUT-PWY]], L-proline degradation I:
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
* [[PWY-6853]], ethene biosynthesis II (microbes):
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
** '''7''' reactions found over '''8''' reactions in the full pathway
 
−
** '''7''' reactions found over '''8''' reactions in the full pathway
 
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
−
** '''4''' reactions found over '''8''' reactions in the full pathway
 
−
** '''4''' reactions found over '''8''' reactions in the full pathway
 
−
** '''7''' reactions found over '''7''' reactions in the full pathway
 
−
** '''7''' reactions found over '''7''' reactions in the full pathway
 
−
** '''2''' reactions found over '''6''' reactions in the full pathway
 
−
** '''2''' reactions found over '''6''' reactions in the full pathway
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
 
** '''2''' reactions found over '''5''' reactions in the full pathway
 
** '''2''' reactions found over '''5''' reactions in the full pathway
−
</div>
+
* [[ARGASEDEG-PWY]], L-arginine degradation I (arginase pathway):
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* DB : UNIPROT
+
* METANETX-RXN : MNXR103352
−
* ID : Q10132
+
* LIGAND-RXN:
−
{{#set: common-name=isopentenyl-diphosphate delta-isomerase}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00245 R00245]
−
{{#set: ec-number=ec-5.3.3.2}}
+
* RHEA:
−
{{#set: direction=reversible}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30236 30236]
−
{{#set: nb gene associated=2}}
+
{{#set: common-name=l-glutamate &gamma;-semialdehyde dehydrogenase}}
−
{{#set: nb pathway associated=10}}
+
{{#set: ec-number=ec-1.2.1.88}}
 +
{{#set: direction=left-to-right}}
 +
{{#set: nb gene associated=6}}
 +
{{#set: nb pathway associated=3}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}

Latest revision as of 19:41, 17 March 2021

Reaction RXN-14116

  • common-name:
    • l-glutamate γ-semialdehyde dehydrogenase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PROUT-PWY, L-proline degradation I:
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6853, ethene biosynthesis II (microbes):
    • 2 reactions found over 5 reactions in the full pathway
  • ARGASEDEG-PWY, L-arginine degradation I (arginase pathway):
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR103352
  • LIGAND-RXN:
  • RHEA:





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