Difference between revisions of "DTDPGLUCDEHYDRAT-RXN"

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(Created page with "Category:reaction == Reaction IPPISOM-RXN == * common-name: ** isopentenyl-diphosphate delta-isomerase * ec-number: ** [http://enzyme.expasy.org/EC/5.3.3.2 ec-5.3.3.2] * d...")
(Created page with "Category:reaction == Reaction DTDPGLUCDEHYDRAT-RXN == * common-name: ** dtdp-glucose 4,6-dehydratase * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.46 ec-4.2.1.46] * d...")
 
(One intermediate revision by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction IPPISOM-RXN ==
+
== Reaction DTDPGLUCDEHYDRAT-RXN ==
 
* common-name:
 
* common-name:
−
** isopentenyl-diphosphate delta-isomerase
+
** dtdp-glucose 4,6-dehydratase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.3.3.2 ec-5.3.3.2]
+
** [http://enzyme.expasy.org/EC/4.2.1.46 ec-4.2.1.46]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DELTA3-ISOPENTENYL-PP]][c] '''<=>''' 1 [[CPD-4211]][c]
+
* 1 [[DTDP-D-GLUCOSE]][c] '''=>''' 1 [[DTDP-DEOH-DEOXY-GLUCOSE]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_00110]]
+
* Gene: [[E_subulatus_18894]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_00109]]
+
* Gene: [[E_subulatus_21311]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[E_subulatus_18893]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I:
+
* [[PWY-7657]], dTDP-&beta;-L-digitoxose biosynthesis:
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
** '''1''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-7560]], methylerythritol phosphate pathway II:
+
* [[PWY-6953]], dTDP-3-acetamido-&alpha;-D-fucose biosynthesis:
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''1''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-7391]], isoprene biosynthesis II (engineered):
+
* [[PWY-7318]], dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis:
−
** '''7''' reactions found over '''8''' reactions in the full pathway
+
** '''1''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-6174]], mevalonate pathway II (haloarchaea):
+
* [[PWY-7104]], dTDP-&beta;-L-megosamine biosynthesis:
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
** '''1''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-7524]], mevalonate pathway III (Thermoplasma):
+
* [[PWY-6973]], dTDP-&alpha;-D-olivose, dTDP-&alpha;-D-oliose and dTDP-&alpha;-D-mycarose biosynthesis:
−
** '''4''' reactions found over '''8''' reactions in the full pathway
+
** '''1''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-922]], mevalonate pathway I (eukaryotes and bacteria):
+
* [[DTDPRHAMSYN-PWY]], dTDP-&beta;-L-rhamnose biosynthesis:
−
** '''7''' reactions found over '''7''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-7102]], bisabolene biosynthesis (engineered):
+
* [[PWY-7413]], dTDP-6-deoxy-&alpha;-D-allose biosynthesis:
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7316]], dTDP-N-acetylviosamine biosynthesis:
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7301]], dTDP-4-O-demethyl-&beta;-L-noviose biosynthesis:
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7814]], dTDP-L-daunosamine biosynthesis:
 
** '''2''' reactions found over '''6''' reactions in the full pathway
 
** '''2''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-6859]], all-trans-farnesol biosynthesis:
+
* [[PWY-6974]], dTDP-&beta;-L-olivose biosynthesis:
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''1''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis:
+
* [[PWY-7440]], dTDP-&beta;-L-4-epi-vancosamine biosynthesis:
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''1''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-6383]], mono-trans, poly-cis decaprenyl phosphate biosynthesis:
+
* [[PWY-6942]], dTDP-D-desosamine biosynthesis:
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
** '''1''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7414]], dTDP-&alpha;-D-mycaminose biosynthesis:
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7312]], dTDP-&beta;-D-fucofuranose biosynthesis:
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6976]], dTDP-&beta;-L-mycarose biosynthesis:
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6808]], dTDP-&alpha;-D-forosamine biosynthesis:
 +
** '''1''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7315]], dTDP-N-acetylthomosamine biosynthesis:
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7688]], dTDP-&alpha;-D-ravidosamine and dTDP-4-acetyl-&alpha;-D-ravidosamine biosynthesis:
 +
** '''1''' reactions found over '''6''' reactions in the full pathway
 
</div>
 
</div>
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR100796
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR104761
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23287 23287]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17221 17221]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01123 R01123]
+
** [http://www.genome.jp/dbget-bin/www_bget?R06513 R06513]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P15496 P15496]
+
** [http://www.uniprot.org/uniprot/Q9R5L1 Q9R5L1]
−
** [http://www.uniprot.org/uniprot/Q10132 Q10132]
+
** [http://www.uniprot.org/uniprot/P44914 P44914]
−
** [http://www.uniprot.org/uniprot/Q38929 Q38929]
+
** [http://www.uniprot.org/uniprot/P29782 P29782]
−
** [http://www.uniprot.org/uniprot/Q42553 Q42553]
+
** [http://www.uniprot.org/uniprot/P27830 P27830]
−
** [http://www.uniprot.org/uniprot/P93355 P93355]
+
** [http://www.uniprot.org/uniprot/P55294 P55294]
−
** [http://www.uniprot.org/uniprot/O81691 O81691]
+
** [http://www.uniprot.org/uniprot/Q9S642 Q9S642]
−
** [http://www.uniprot.org/uniprot/Q9SAY0 Q9SAY0]
+
** [http://www.uniprot.org/uniprot/P37759 P37759]
−
** [http://www.uniprot.org/uniprot/O81660 O81660]
+
** [http://www.uniprot.org/uniprot/P26391 P26391]
−
** [http://www.uniprot.org/uniprot/O81659 O81659]
+
** [http://www.uniprot.org/uniprot/Q59626 Q59626]
−
{{#set: common-name=isopentenyl-diphosphate delta-isomerase}}
+
** [http://www.uniprot.org/uniprot/P39630 P39630]
−
{{#set: ec-number=ec-5.3.3.2}}
+
** [http://www.uniprot.org/uniprot/P37777 P37777]
−
{{#set: direction=reversible}}
+
** [http://www.uniprot.org/uniprot/P37761 P37761]
−
{{#set: nb gene associated=2}}
+
** [http://www.uniprot.org/uniprot/Q54144 Q54144]
−
{{#set: nb pathway associated=10}}
+
** [http://www.uniprot.org/uniprot/Q56173 Q56173]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/Q55420 Q55420]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/P55293 P55293]
 +
** [http://www.uniprot.org/uniprot/O66249 O66249]
 +
** [http://www.uniprot.org/uniprot/Q9RMC4 Q9RMC4]
 +
** [http://www.uniprot.org/uniprot/O08246 O08246]
 +
** [http://www.uniprot.org/uniprot/Q9RR28 Q9RR28]
 +
** [http://www.uniprot.org/uniprot/Q9SMJ5 Q9SMJ5]
 +
</div>
 +
{{#set: common-name=dtdp-glucose 4,6-dehydratase}}
 +
{{#set: ec-number=ec-4.2.1.46}}
 +
{{#set: direction=left-to-right}}
 +
{{#set: nb gene associated=3}}
 +
{{#set: nb pathway associated=19}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=ectocarpus_subulatus}}
+
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}

Latest revision as of 19:41, 17 March 2021

Reaction DTDPGLUCDEHYDRAT-RXN

  • common-name:
    • dtdp-glucose 4,6-dehydratase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7657, dTDP-β-L-digitoxose biosynthesis:
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-6953, dTDP-3-acetamido-α-D-fucose biosynthesis:
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-7318, dTDP-3-acetamido-3,6-dideoxy-α-D-glucose biosynthesis:
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-7104, dTDP-β-L-megosamine biosynthesis:
    • 1 reactions found over 8 reactions in the full pathway
  • PWY-6973, dTDP-α-D-olivose, dTDP-α-D-oliose and dTDP-α-D-mycarose biosynthesis:
    • 1 reactions found over 9 reactions in the full pathway
  • DTDPRHAMSYN-PWY, dTDP-β-L-rhamnose biosynthesis:
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7413, dTDP-6-deoxy-α-D-allose biosynthesis:
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7316, dTDP-N-acetylviosamine biosynthesis:
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7301, dTDP-4-O-demethyl-β-L-noviose biosynthesis:
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7814, dTDP-L-daunosamine biosynthesis:
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-6974, dTDP-β-L-olivose biosynthesis:
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-7440, dTDP-β-L-4-epi-vancosamine biosynthesis:
    • 1 reactions found over 8 reactions in the full pathway
  • PWY-6942, dTDP-D-desosamine biosynthesis:
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-7414, dTDP-α-D-mycaminose biosynthesis:
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-7312, dTDP-β-D-fucofuranose biosynthesis:
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-6976, dTDP-β-L-mycarose biosynthesis:
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-6808, dTDP-α-D-forosamine biosynthesis:
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-7315, dTDP-N-acetylthomosamine biosynthesis:
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7688, dTDP-α-D-ravidosamine and dTDP-4-acetyl-α-D-ravidosamine biosynthesis:
    • 1 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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