Difference between revisions of "5.3.4.1-RXN"

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(Created page with "Category:reaction == Reaction BIOTIN-CARBOXYL-RXN == * common-name: ** biotin carboxylase * ec-number: ** [http://enzyme.expasy.org/EC/6.3.4.14 ec-6.3.4.14] * direction: *...")
 
(Created page with "Category:reaction == Reaction 5.3.4.1-RXN == * common-name: ** protein disulfide isomerase * ec-number: ** [http://enzyme.expasy.org/EC/5.3.4.1 ec-5.3.4.1] * direction: **...")
 
(3 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction BIOTIN-CARBOXYL-RXN ==
+
== Reaction 5.3.4.1-RXN ==
 
* common-name:
 
* common-name:
−
** biotin carboxylase
+
** protein disulfide isomerase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.3.4.14 ec-6.3.4.14]
+
** [http://enzyme.expasy.org/EC/5.3.4.1 ec-5.3.4.1]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[biotin-L-lysine-in-BCCP-dimers]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[carboxybiotin-L-lysine-in-BCCP-dimers]][c]
+
* 1 [[Proteins-with-incorrect-disulfides]][c] '''=>''' 1 [[Proteins-with-correct-disulfides]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[E_subulatus_04286]]
+
* Gene: [[E_subulatus_02339]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_21382]]
+
* Gene: [[E_subulatus_09786]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_23836]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_16661]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_04285]]
+
* Gene: [[E_subulatus_14010]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_21148]]
+
* Gene: [[E_subulatus_23835]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_14295]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_21387]]
+
* Gene: [[E_subulatus_23834]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_05704]]
+
* Gene: [[E_subulatus_17537]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_21386]]
+
* Gene: [[E_subulatus_14294]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_22691]]
+
* Gene: [[E_subulatus_14007]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_21384]]
+
* Gene: [[E_subulatus_13356]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_21151]]
+
* Gene: [[E_subulatus_14006]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_21150]]
+
* Gene: [[E_subulatus_14008]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_08408]]
+
* Gene: [[E_subulatus_19754]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_23833]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_02689]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_13357]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_14009]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_21149]]
+
* Gene: [[E_subulatus_13631]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_17536]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_19753]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_12650]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_05705]]
+
* Gene: [[E_subulatus_02688]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_21385]]
+
* Gene: [[E_subulatus_16662]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_21383]]
+
* Gene: [[E_subulatus_09785]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** '''3''' reactions found over '''11''' reactions in the full pathway
 
−
** '''3''' reactions found over '''11''' reactions in the full pathway
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
** '''6''' reactions found over '''11''' reactions in the full pathway
 
−
** '''6''' reactions found over '''11''' reactions in the full pathway
 
−
** '''9''' reactions found over '''16''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* DB : UNIPROT
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* ID : P24182
+
* METANETX-RXN : MNXR115628
−
{{#set: common-name=biotin carboxylase}}
+
* UNIPROT:
−
{{#set: ec-number=ec-6.3.4.14}}
+
** [http://www.uniprot.org/uniprot/P13667 P13667]
 +
** [http://www.uniprot.org/uniprot/P11598 P11598]
 +
** [http://www.uniprot.org/uniprot/P21195 P21195]
 +
** [http://www.uniprot.org/uniprot/P0AEG4 P0AEG4]
 +
** [http://www.uniprot.org/uniprot/P29828 P29828]
 +
** [http://www.uniprot.org/uniprot/P32557 P32557]
 +
** [http://www.uniprot.org/uniprot/Q27780 Q27780]
 +
** [http://www.uniprot.org/uniprot/P31810 P31810]
 +
** [http://www.uniprot.org/uniprot/Q9PDE2 Q9PDE2]
 +
** [http://www.uniprot.org/uniprot/O27777 O27777]
 +
** [http://www.uniprot.org/uniprot/Q9JSN7 Q9JSN7]
 +
** [http://www.uniprot.org/uniprot/P45111 P45111]
 +
** [http://www.uniprot.org/uniprot/P0AEG6 P0AEG6]
 +
** [http://www.uniprot.org/uniprot/O68904 O68904]
 +
** [http://www.uniprot.org/uniprot/Q9PCE7 Q9PCE7]
 +
** [http://www.uniprot.org/uniprot/Q9PDF5 Q9PDF5]
 +
** [http://www.uniprot.org/uniprot/Q9JSY5 Q9JSY5]
 +
** [http://www.uniprot.org/uniprot/Q9KPF0 Q9KPF0]
 +
** [http://www.uniprot.org/uniprot/P95460 P95460]
 +
** [http://www.uniprot.org/uniprot/P05307 P05307]
 +
** [http://www.uniprot.org/uniprot/P17967 P17967]
 +
** [http://www.uniprot.org/uniprot/P09102 P09102]
 +
** [http://www.uniprot.org/uniprot/P07237 P07237]
 +
** [http://www.uniprot.org/uniprot/P08003 P08003]
 +
** [http://www.uniprot.org/uniprot/Q922C8 Q922C8]
 +
** [http://www.uniprot.org/uniprot/P04785 P04785]
 +
** [http://www.uniprot.org/uniprot/P55059 P55059]
 +
** [http://www.uniprot.org/uniprot/Q27553 Q27553]
 +
** [http://www.uniprot.org/uniprot/P30101 P30101]
 +
** [http://www.uniprot.org/uniprot/Q7M1Q4 Q7M1Q4]
 +
** [http://www.uniprot.org/uniprot/Q04815 Q04815]
 +
** [http://www.uniprot.org/uniprot/P39691 P39691]
 +
** [http://www.uniprot.org/uniprot/P34329 P34329]
 +
** [http://www.uniprot.org/uniprot/Q12730 Q12730]
 +
** [http://www.uniprot.org/uniprot/Q43116 Q43116]
 +
** [http://www.uniprot.org/uniprot/Q9TWZ1 Q9TWZ1]
 +
** [http://www.uniprot.org/uniprot/P52588 P52588]
 +
** [http://www.uniprot.org/uniprot/Q17967 Q17967]
 +
** [http://www.uniprot.org/uniprot/P52234 P52234]
 +
** [http://www.uniprot.org/uniprot/O22263 O22263]
 +
** [http://www.uniprot.org/uniprot/P93358 P93358]
 +
** [http://www.uniprot.org/uniprot/P80284 P80284]
 +
** [http://www.uniprot.org/uniprot/P52589 P52589]
 +
** [http://www.uniprot.org/uniprot/O48949 O48949]
 +
** [http://www.uniprot.org/uniprot/P38661 P38661]
 +
** [http://www.uniprot.org/uniprot/O13704 O13704]
 +
** [http://www.uniprot.org/uniprot/O13811 O13811]
 +
** [http://www.uniprot.org/uniprot/Q10057 Q10057]
 +
** [http://www.uniprot.org/uniprot/Q92249 Q92249]
 +
</div>
 +
{{#set: common-name=protein disulfide isomerase}}
 +
{{#set: ec-number=ec-5.3.4.1}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=16}}
+
{{#set: nb gene associated=26}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=0}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}

Latest revision as of 19:41, 17 March 2021

Reaction 5.3.4.1-RXN

  • common-name:
    • protein disulfide isomerase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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