Difference between revisions of "RXN-16131"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction RXN-8660 == * common-name: ** [histone-h3]-lysine-36 demethylase * direction: ** left-to-right * synonymous: ** protein-6-n,6-n-dimethyl-l-ly...")
(Created page with "Category:reaction == Reaction RXN-16131 == * direction: ** left-to-right * ec_number: ** ec-1.3.1.93 == Reaction formula == * 1 CPD-17383[c] '''+''' 1 NADPH[c] '''...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN-8660 ==
+
== Reaction RXN-16131 ==
* common-name:
 
** [histone-h3]-lysine-36 demethylase
 
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
* synonymous:
+
* ec_number:
** protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase
+
** ec-1.3.1.93
** histone-lysine (h3-k36) demethylase
 
** histone demethylase
 
** jhdm1a
 
** h3-k36-specific demethylase
 
** jmjc domain-containing histone demethylase 1a
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CPD-8900]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-8901]][c] '''+''' 1 [[FORMALDEHYDE]][c] '''+''' 1 [[SUC]][c]
+
* 1 [[CPD-17383]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD-17331]][c] '''+''' 1 [[NADP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* Gene: [[E_subulatus_02373]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_06818]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_02374]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_24734]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_02372]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_14637]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_02371]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-7606]], docosahexaenoate biosynthesis III (6-desaturase, mammals):
 +
** '''14''' reactions found over '''14''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[manual]]; source: [[esub_adding_annot_form]]; tool: [[curation]]; comment: annotation
 
== External links  ==
 
== External links  ==
* METANETX-RXN : MNXR122415
+
* METANETX-RXN : MNXR119876
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21789 21789]
 
{{#set: common-name=[histone-h3]-lysine-36 demethylase}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: synonymous=histone demethylase|h3-k36-specific demethylase|jmjc domain-containing histone demethylase 1a|histone-lysine (h3-k36) demethylase|protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase|jhdm1a}}
+
{{#set: ec_number=ec-1.3.1.93}}
{{#set: nb gene associated=7}}
+
{{#set: nb gene associated=0}}
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=1}}
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=manual}}
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=curation}}
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction comment=annotation}}
{{#set: reconstruction source=ectocarpus_subulatus}}
+
{{#set: reconstruction source=esub_adding_annot_form}}

Latest revision as of 19:41, 17 March 2021

Reaction RXN-16131

  • direction:
    • left-to-right
  • ec_number:
    • ec-1.3.1.93

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7606, docosahexaenoate biosynthesis III (6-desaturase, mammals):
    • 14 reactions found over 14 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR119876