Difference between revisions of "OHMETHYLBILANESYN-RXN"

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(Created page with "Category:reaction == Reaction RXN-13729 == * common-name: ** phytosphingosine 1-phosphate aldolase * ec-number: ** [http://enzyme.expasy.org/EC/4.1.2.27 ec-4.1.2.27] * dir...")
 
(Created page with "Category:reaction == Reaction OHMETHYLBILANESYN-RXN == * common-name: ** hydroxymethylbilane synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.61 ec-2.5.1.61] *...")
 
(3 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-13729 ==
+
== Reaction OHMETHYLBILANESYN-RXN ==
 
* common-name:
 
* common-name:
−
** phytosphingosine 1-phosphate aldolase
+
** hydroxymethylbilane synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.2.27 ec-4.1.2.27]
+
** [http://enzyme.expasy.org/EC/2.5.1.61 ec-2.5.1.61]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PHTYOSPHINGOSINE-1-P]][c] '''=>''' 1 [[CPD-14766]][c] '''+''' 1 [[PHOSPHORYL-ETHANOLAMINE]][c]
+
* 4 [[PORPHOBILINOGEN]][c] '''+''' 1 [[WATER]][c] '''=>''' 4 [[AMMONIUM]][c] '''+''' 1 [[HYDROXYMETHYLBILANE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[E_subulatus_07066]]
−
* Gene: [[E_subulatus_02588]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_02593]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_13281]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_13280]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_02592]]
+
* Gene: [[E_subulatus_07065]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_02591]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_02590]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_13282]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_02589]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
* [[PWY-5189]], tetrapyrrole biosynthesis II (from glycine):
−
** '''2''' reactions found over '''11''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate):
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: common-name=phytosphingosine 1-phosphate aldolase}}
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
{{#set: ec-number=ec-4.1.2.27}}
+
* METANETX-RXN : MNXR100658
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13185 13185]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00084 R00084]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q57989 Q57989]
 +
** [http://www.uniprot.org/uniprot/O29026 O29026]
 +
** [http://www.uniprot.org/uniprot/P64336 P64336]
 +
** [http://www.uniprot.org/uniprot/Q9ZMJ7 Q9ZMJ7]
 +
** [http://www.uniprot.org/uniprot/Q9PHW9 Q9PHW9]
 +
** [http://www.uniprot.org/uniprot/Q9JVS4 Q9JVS4]
 +
** [http://www.uniprot.org/uniprot/P28464 P28464]
 +
** [http://www.uniprot.org/uniprot/Q9K0P6 Q9K0P6]
 +
** [http://www.uniprot.org/uniprot/P56140 P56140]
 +
** [http://www.uniprot.org/uniprot/Q9Y9J0 Q9Y9J0]
 +
** [http://www.uniprot.org/uniprot/Q9RRY0 Q9RRY0]
 +
** [http://www.uniprot.org/uniprot/O26960 O26960]
 +
** [http://www.uniprot.org/uniprot/Q9ZD77 Q9ZD77]
 +
** [http://www.uniprot.org/uniprot/P06983 P06983]
 +
** [http://www.uniprot.org/uniprot/P13446 P13446]
 +
** [http://www.uniprot.org/uniprot/P08397 P08397]
 +
** [http://www.uniprot.org/uniprot/P22907 P22907]
 +
** [http://www.uniprot.org/uniprot/P19356 P19356]
 +
** [http://www.uniprot.org/uniprot/Q43082 Q43082]
 +
** [http://www.uniprot.org/uniprot/P40129 P40129]
 +
** [http://www.uniprot.org/uniprot/P30527 P30527]
 +
** [http://www.uniprot.org/uniprot/P28789 P28789]
 +
** [http://www.uniprot.org/uniprot/Q60169 Q60169]
 +
** [http://www.uniprot.org/uniprot/Q43316 Q43316]
 +
** [http://www.uniprot.org/uniprot/Q49808 Q49808]
 +
** [http://www.uniprot.org/uniprot/P73660 P73660]
 +
** [http://www.uniprot.org/uniprot/Q9WX16 Q9WX16]
 +
** [http://www.uniprot.org/uniprot/Q09899 Q09899]
 +
** [http://www.uniprot.org/uniprot/Q9ZND1 Q9ZND1]
 +
</div>
 +
{{#set: common-name=hydroxymethylbilane synthase}}
 +
{{#set: ec-number=ec-2.5.1.61}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=9}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=ectocarpus_subulatus}}
+
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}

Latest revision as of 19:39, 17 March 2021

Reaction OHMETHYLBILANESYN-RXN

  • common-name:
    • hydroxymethylbilane synthase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5189, tetrapyrrole biosynthesis II (from glycine):
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5188, tetrapyrrole biosynthesis I (from glutamate):
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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