Difference between revisions of "RXN-5482"

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(Created page with "Category:reaction == Reaction ExchangeSeed-ADP == * direction: ** reversible == Reaction formula == * 1.0 ADP[C-BOUNDARY] '''<=>''' 1.0 ADP[e] == Gene(s) associate...")
(Created page with "Category:reaction == Reaction TRYPSYN-RXN == * common-name: ** tryptophan synthase * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.20 ec-4.2.1.20] * direction: ** left-...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ExchangeSeed-ADP ==
+
== Reaction TRYPSYN-RXN ==
 +
* common-name:
 +
** tryptophan synthase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/4.2.1.20 ec-4.2.1.20]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[ADP]][C-BOUNDARY] '''<=>''' 1.0 [[ADP]][e]
+
* 1 [[INDOLE-3-GLYCEROL-P]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[GAP]][c] '''+''' 1 [[TRP]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[E_subulatus_00780]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_00779]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_10239]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[E_subulatus_00782]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_00781]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_10240]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_18297]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[E_subulatus_10241]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment
+
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=reversible}}
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
{{#set: nb gene associated=0}}
+
* METANETX-RXN : MNXR104343
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10533 10533]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R02722 R02722]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P11081 P11081]
 +
** [http://www.uniprot.org/uniprot/P14671 P14671]
 +
** [http://www.uniprot.org/uniprot/P13228 P13228]
 +
** [http://www.uniprot.org/uniprot/P18284 P18284]
 +
** [http://www.uniprot.org/uniprot/P43759 P43759]
 +
** [http://www.uniprot.org/uniprot/O84172 O84172]
 +
** [http://www.uniprot.org/uniprot/P11080 P11080]
 +
** [http://www.uniprot.org/uniprot/P16608 P16608]
 +
** [http://www.uniprot.org/uniprot/P18285 P18285]
 +
** [http://www.uniprot.org/uniprot/P16706 P16706]
 +
** [http://www.uniprot.org/uniprot/P12290 P12290]
 +
** [http://www.uniprot.org/uniprot/P42391 P42391]
 +
** [http://www.uniprot.org/uniprot/Q9PIF2 Q9PIF2]
 +
** [http://www.uniprot.org/uniprot/P12291 P12291]
 +
** [http://www.uniprot.org/uniprot/P42389 P42389]
 +
** [http://www.uniprot.org/uniprot/Q60179 Q60179]
 +
** [http://www.uniprot.org/uniprot/Q9PIF1 Q9PIF1]
 +
** [http://www.uniprot.org/uniprot/P07600 P07600]
 +
** [http://www.uniprot.org/uniprot/P07601 P07601]
 +
** [http://www.uniprot.org/uniprot/P06561 P06561]
 +
** [http://www.uniprot.org/uniprot/P56142 P56142]
 +
** [http://www.uniprot.org/uniprot/P06562 P06562]
 +
** [http://www.uniprot.org/uniprot/O27696 O27696]
 +
** [http://www.uniprot.org/uniprot/O28672 O28672]
 +
** [http://www.uniprot.org/uniprot/O66923 O66923]
 +
** [http://www.uniprot.org/uniprot/Q9JVC0 Q9JVC0]
 +
** [http://www.uniprot.org/uniprot/P43760 P43760]
 +
** [http://www.uniprot.org/uniprot/P34817 P34817]
 +
** [http://www.uniprot.org/uniprot/P34816 P34816]
 +
** [http://www.uniprot.org/uniprot/P17167 P17167]
 +
** [http://www.uniprot.org/uniprot/P17166 P17166]
 +
** [http://www.uniprot.org/uniprot/P19868 P19868]
 +
** [http://www.uniprot.org/uniprot/P19867 P19867]
 +
** [http://www.uniprot.org/uniprot/P16578 P16578]
 +
** [http://www.uniprot.org/uniprot/P43283 P43283]
 +
** [http://www.uniprot.org/uniprot/P43284 P43284]
 +
** [http://www.uniprot.org/uniprot/Q57011 Q57011]
 +
** [http://www.uniprot.org/uniprot/P31204 P31204]
 +
** [http://www.uniprot.org/uniprot/Q01998 Q01998]
 +
** [http://www.uniprot.org/uniprot/Q01997 Q01997]
 +
** [http://www.uniprot.org/uniprot/P34793 P34793]
 +
** [http://www.uniprot.org/uniprot/P42390 P42390]
 +
** [http://www.uniprot.org/uniprot/P50909 P50909]
 +
** [http://www.uniprot.org/uniprot/Q42529 Q42529]
 +
** [http://www.uniprot.org/uniprot/P51382 P51382]
 +
** [http://www.uniprot.org/uniprot/P77960 P77960]
 +
** [http://www.uniprot.org/uniprot/Q59992 Q59992]
 +
** [http://www.uniprot.org/uniprot/O22765 O22765]
 +
** [http://www.uniprot.org/uniprot/O04225 O04225]
 +
** [http://www.uniprot.org/uniprot/P25269 P25269]
 +
** [http://www.uniprot.org/uniprot/O64991 O64991]
 +
** [http://www.uniprot.org/uniprot/O05625 O05625]
 +
** [http://www.uniprot.org/uniprot/O13831 O13831]
 +
** [http://www.uniprot.org/uniprot/Q9YGB0 Q9YGB0]
 +
** [http://www.uniprot.org/uniprot/Q9YGA9 Q9YGA9]
 +
** [http://www.uniprot.org/uniprot/Q9X7C8 Q9X7C8]
 +
** [http://www.uniprot.org/uniprot/P00931 P00931]
 +
** [http://www.uniprot.org/uniprot/P00929 P00929]
 +
** [http://www.uniprot.org/uniprot/P0A2K1 P0A2K1]
 +
** [http://www.uniprot.org/uniprot/P0A877 P0A877]
 +
** [http://www.uniprot.org/uniprot/P0A879 P0A879]
 +
</div>
 +
{{#set: common-name=tryptophan synthase}}
 +
{{#set: ec-number=ec-4.2.1.20}}
 +
{{#set: direction=left-to-right}}
 +
{{#set: nb gene associated=8}}
 
{{#set: nb pathway associated=0}}
 
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
+
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=import_from_medium}}
+
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}

Revision as of 15:22, 15 March 2021

Reaction TRYPSYN-RXN

  • common-name:
    • tryptophan synthase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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