Difference between revisions of "RXN-14467"

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(Created page with "Category:reaction == Reaction 3.1.6.12-RXN == * common-name: ** n-acetylgalactosamine-4-sulfatase * ec-number: ** [http://enzyme.expasy.org/EC/3.1.6.12 ec-3.1.6.12] * dire...")
(Created page with "Category:reaction == Reaction RXN-11667 == * common-name: ** (s)-3-hydroxybutanoyl-coa dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.150 ec-4.2.1.150] *...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3.1.6.12-RXN ==
+
== Reaction RXN-11667 ==
 
* common-name:
 
* common-name:
−
** n-acetylgalactosamine-4-sulfatase
+
** (s)-3-hydroxybutanoyl-coa dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.6.12 ec-3.1.6.12]
+
** [http://enzyme.expasy.org/EC/4.2.1.150 ec-4.2.1.150]
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CHONDROITIN-4-SULFATE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Chondroitin-N-acetyl-galactosamines]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SULFATE]][c]
+
* 1 [[S-3-HYDROXYBUTANOYL-COA]][c] '''<=>''' 1 [[CROTONYL-COA]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[EsuBft327_5a]]
−
* Gene: [[E_subulatus_03035]]
+
** Category: [[manual]]
−
** Category: [[annotation]]
+
*** Source: [[esub_adding_annot_form]], Tool: [[unknown-tool]], Assignment: n.a, Comment: annotation
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
* Gene: [[EsuBft1203_2a]]
−
* Gene: [[E_subulatus_16373]]
+
** Category: [[manual]]
−
** Category: [[annotation]]
+
*** Source: [[esub_adding_annot_form]], Tool: [[unknown-tool]], Assignment: n.a, Comment: annotation
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
* Gene: [[E_subulatus_13805]]
−
* Gene: [[E_subulatus_12575]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
* Gene: [[E_subulatus_02116]]
−
* Gene: [[E_subulatus_18924]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_03036]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_03034]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_03033]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6583]], pyruvate fermentation to butanol I:
 +
** '''6''' reactions found over '''8''' reactions in the full pathway
 +
* [[CENTFERM-PWY]], pyruvate fermentation to butanoate:
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate):
 +
** '''5''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7401]], crotonate fermentation (to acetate and cyclohexane carboxylate):
 +
** '''4''' reactions found over '''15''' reactions in the full pathway
 +
* [[PWY-6863]], pyruvate fermentation to hexanol (engineered):
 +
** '''6''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle:
 +
** '''9''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY-5177]], glutaryl-CoA degradation:
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[P3-PWY]], gallate degradation III (anaerobic):
 +
** '''3''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-6883]], pyruvate fermentation to butanol II (engineered):
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[manual]]; source: [[esub_adding_annot_form]]; tool: [[curation]]; comment: annotation
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR115306
+
* METANETX-RXN : MNXR97883
−
* UNIPROT:
+
* RHEA:
−
** [http://www.uniprot.org/uniprot/P33727 P33727]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26561 26561]
−
** [http://www.uniprot.org/uniprot/P50430 P50430]
+
* LIGAND-RXN:
−
** [http://www.uniprot.org/uniprot/P15848 P15848]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03026 R03026]
−
{{#set: common-name=n-acetylgalactosamine-4-sulfatase}}
+
{{#set: common-name=(s)-3-hydroxybutanoyl-coa dehydrogenase}}
−
{{#set: ec-number=ec-3.1.6.12}}
+
{{#set: ec-number=ec-4.2.1.150}}
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: nb gene associated=7}}
+
{{#set: nb gene associated=4}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=9}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=manual|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|curation}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction comment=annotation|n.a}}
−
{{#set: reconstruction source=ectocarpus_subulatus}}
+
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|esub_adding_annot_form}}

Revision as of 19:04, 17 March 2021

Reaction RXN-11667

  • common-name:
    • (s)-3-hydroxybutanoyl-coa dehydrogenase
  • ec-number:
  • direction:
    • reversible

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6583, pyruvate fermentation to butanol I:
    • 6 reactions found over 8 reactions in the full pathway
  • CENTFERM-PWY, pyruvate fermentation to butanoate:
    • 4 reactions found over 7 reactions in the full pathway
  • P162-PWY, L-glutamate degradation V (via hydroxyglutarate):
    • 5 reactions found over 10 reactions in the full pathway
  • PWY-7401, crotonate fermentation (to acetate and cyclohexane carboxylate):
    • 4 reactions found over 15 reactions in the full pathway
  • PWY-6863, pyruvate fermentation to hexanol (engineered):
    • 6 reactions found over 11 reactions in the full pathway
  • PWY-5789, 3-hydroxypropanoate/4-hydroxybutanate cycle:
    • 9 reactions found over 18 reactions in the full pathway
  • PWY-5177, glutaryl-CoA degradation:
    • 3 reactions found over 5 reactions in the full pathway
  • P3-PWY, gallate degradation III (anaerobic):
    • 3 reactions found over 11 reactions in the full pathway
  • PWY-6883, pyruvate fermentation to butanol II (engineered):
    • 4 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR97883
  • RHEA:
  • LIGAND-RXN:





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