Difference between revisions of "RXN-17352"

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(Created page with "Category:reaction == Reaction RIB5PISOM-RXN == * common-name: ** ribose-5-phosphate isomerase a * ec-number: ** [http://enzyme.expasy.org/EC/5.3.1.6 ec-5.3.1.6] * directio...")
(Created page with "Category:reaction == Reaction AMP-DEAMINASE-RXN == * common-name: ** amp deaminase * ec-number: ** [http://enzyme.expasy.org/EC/3.5.4.17 ec-3.5.4.17] ** [http://enzyme.exp...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RIB5PISOM-RXN ==
+
== Reaction AMP-DEAMINASE-RXN ==
 
* common-name:
 
* common-name:
−
** ribose-5-phosphate isomerase a
+
** amp deaminase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.3.1.6 ec-5.3.1.6]
+
** [http://enzyme.expasy.org/EC/3.5.4.17 ec-3.5.4.17]
 +
** [http://enzyme.expasy.org/EC/3.5.4.6 ec-3.5.4.6]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[RIBOSE-5P]][c] '''<=>''' 1 [[RIBULOSE-5P]][c]
+
* 1 [[AMP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[IMP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_18449]]
+
* Gene: [[E_subulatus_24262]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_05395]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_24263]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle):
+
* [[PWY-6596]], adenosine nucleotides degradation I:
−
** '''11''' reactions found over '''12''' reactions in the full pathway
+
** '''6''' reactions found over '''8''' reactions in the full pathway
−
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch) I:
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle:
 
−
** '''12''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-5723]], Rubisco shunt:
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[P124-PWY]], Bifidobacterium shunt:
 
−
** '''11''' reactions found over '''15''' reactions in the full pathway
 
−
* [[PWY-1861]], formaldehyde assimilation II (assimilatory RuMP Cycle):
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR141207
+
* METANETX-RXN : MNXR95824
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14660 14660]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14778 14778]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01056 R01056]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00181 R00181]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P0A7Z0 P0A7Z0]
+
** [http://www.uniprot.org/uniprot/P10759 P10759]
−
** [http://www.uniprot.org/uniprot/Q9CDI7 Q9CDI7]
+
** [http://www.uniprot.org/uniprot/Q02356 Q02356]
−
** [http://www.uniprot.org/uniprot/P44725 P44725]
+
** [http://www.uniprot.org/uniprot/P23109 P23109]
−
** [http://www.uniprot.org/uniprot/Q58998 Q58998]
+
** [http://www.uniprot.org/uniprot/P15274 P15274]
−
** [http://www.uniprot.org/uniprot/Q9JTM5 Q9JTM5]
+
** [http://www.uniprot.org/uniprot/Q7M3H8 Q7M3H8]
−
** [http://www.uniprot.org/uniprot/Q9PP08 Q9PP08]
+
** [http://www.uniprot.org/uniprot/Q01433 Q01433]
−
** [http://www.uniprot.org/uniprot/P37351 P37351]
+
** [http://www.uniprot.org/uniprot/Q01432 Q01432]
−
** [http://www.uniprot.org/uniprot/P74234 P74234]
+
{{#set: common-name=amp deaminase}}
−
** [http://www.uniprot.org/uniprot/Q55766 Q55766]
+
{{#set: ec-number=ec-3.5.4.6|ec-3.5.4.17}}
−
{{#set: common-name=ribose-5-phosphate isomerase a}}
+
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-5.3.1.6}}
+
{{#set: nb gene associated=3}}
−
{{#set: direction=reversible}}
+
{{#set: nb pathway associated=1}}
−
{{#set: nb gene associated=1}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: nb pathway associated=6}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}
+
{{#set: reconstruction source=ectocarpus_subulatus}}

Revision as of 19:06, 17 March 2021

Reaction AMP-DEAMINASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6596, adenosine nucleotides degradation I:
    • 6 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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