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| | [[Category:reaction]] | | [[Category:reaction]] |
| − | == Reaction SUCCCOASYN-RXN == | + | == Reaction TransportSeed-MG+2 == |
| − | * common-name:
| |
| − | ** succinyl-coa synthetase
| |
| − | * ec-number:
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| − | ** [http://enzyme.expasy.org/EC/6.2.1.5 ec-6.2.1.5]
| |
| | * direction: | | * direction: |
| − | ** reversible | + | ** left-to-right |
| − | * synonymous:
| |
| − | ** succinyl coa synthesis
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| − | ** succinate thiokinase
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| | == Reaction formula == | | == Reaction formula == |
| − | * 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[SUC]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[SUC-COA]][c] | + | * 1.0 [[MG+2]][e] '''=>''' 1.0 [[MG+2]][c] |
| | == Gene(s) associated with this reaction == | | == Gene(s) associated with this reaction == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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| − | * Gene: [[E_subulatus_17383]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | * Gene: [[E_subulatus_00867]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | * Gene: [[E_subulatus_12371]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | ** Category: [[orthology]]
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| − | *** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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| − | * Gene: [[E_subulatus_17382]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | * Gene: [[E_subulatus_17381]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | * Gene: [[E_subulatus_02430]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[E_subulatus_02431]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | </div>
| |
| | == Pathway(s) == | | == Pathway(s) == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| |
| − | * [[PWY-5538]], pyruvate fermentation to acetate VI:
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| − | ** '''1''' reactions found over '''2''' reactions in the full pathway
| |
| − | * [[PWY-5913]], partial TCA cycle (obligate autotrophs):
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| − | ** '''10''' reactions found over '''8''' reactions in the full pathway
| |
| − | * [[PWY-6728]], methylaspartate cycle:
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| − | ** '''12''' reactions found over '''19''' reactions in the full pathway
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| − | * [[P42-PWY]], incomplete reductive TCA cycle:
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| − | ** '''4''' reactions found over '''7''' reactions in the full pathway
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| − | * [[PWY-5392]], reductive TCA cycle II:
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| − | ** '''5''' reactions found over '''12''' reactions in the full pathway
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| − | * [[P23-PWY]], reductive TCA cycle I:
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| − | ** '''9''' reactions found over '''12''' reactions in the full pathway
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| − | * [[PWY-6969]], TCA cycle V (2-oxoglutarate synthase):
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| − | ** '''10''' reactions found over '''9''' reactions in the full pathway
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| − | * [[TCA]], TCA cycle I (prokaryotic):
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| − | ** '''8''' reactions found over '''10''' reactions in the full pathway
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| − | * [[PWY-5690]], TCA cycle II (plants and fungi):
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| − | ** '''7''' reactions found over '''9''' reactions in the full pathway
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| − | * [[PWY-5537]], pyruvate fermentation to acetate V:
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| − | ** '''2''' reactions found over '''2''' reactions in the full pathway
| |
| − | * [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial):
| |
| − | ** '''8''' reactions found over '''10''' reactions in the full pathway
| |
| − | * [[PWY66-398]], TCA cycle III (animals):
| |
| − | ** '''10''' reactions found over '''10''' reactions in the full pathway
| |
| − | </div>
| |
| | == Reconstruction information == | | == Reconstruction information == |
| − | * category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a | + | * category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from extracellular to cytosol compartment |
| − | * category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
| |
| | == External links == | | == External links == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| + | {{#set: direction=left-to-right}} |
| − | * METANETX-RXN : MNXR104635
| + | {{#set: nb gene associated=0}} |
| − | * RHEA:
| + | {{#set: nb pathway associated=0}} |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17664 17664]
| + | {{#set: reconstruction category=manual}} |
| − | * LIGAND-RXN:
| + | {{#set: reconstruction tool=curation}} |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R00405 R00405]
| + | {{#set: reconstruction comment=added to manage seeds from extracellular to cytosol compartment}} |
| − | * UNIPROT:
| + | {{#set: reconstruction source=import_from_medium}} |
| − | ** [http://www.uniprot.org/uniprot/O28098 O28098]
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| − | ** [http://www.uniprot.org/uniprot/P53594 P53594]
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| − | ** [http://www.uniprot.org/uniprot/O28733 O28733]
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| − | ** [http://www.uniprot.org/uniprot/P45101 P45101]
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| − | ** [http://www.uniprot.org/uniprot/P45102 P45102]
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| − | ** [http://www.uniprot.org/uniprot/Q9JUT0 Q9JUT0]
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| − | ** [http://www.uniprot.org/uniprot/Q58643 Q58643]
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| − | ** [http://www.uniprot.org/uniprot/O26663 O26663]
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| − | ** [http://www.uniprot.org/uniprot/P80886 P80886]
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| − | ** [http://www.uniprot.org/uniprot/Q9PHY1 Q9PHY1]
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| − | ** [http://www.uniprot.org/uniprot/Q9JUS9 Q9JUS9]
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| − | ** [http://www.uniprot.org/uniprot/P80865 P80865]
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| − | ** [http://www.uniprot.org/uniprot/Q9PHY0 Q9PHY0]
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| − | ** [http://www.uniprot.org/uniprot/O67729 O67729]
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| − | ** [http://www.uniprot.org/uniprot/O67546 O67546]
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| − | ** [http://www.uniprot.org/uniprot/P53593 P53593]
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| − | ** [http://www.uniprot.org/uniprot/P0AGE9 P0AGE9]
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| − | ** [http://www.uniprot.org/uniprot/P0A836 P0A836]
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| − | ** [http://www.uniprot.org/uniprot/O82662 O82662]
| |
| − | </div>
| |
| − | {{#set: common-name=succinyl-coa synthetase}} | |
| − | {{#set: ec-number=ec-6.2.1.5}}
| |
| − | {{#set: direction=reversible}}
| |
| − | {{#set: synonymous=succinate thiokinase|succinyl coa synthesis}}
| |
| − | {{#set: nb gene associated=7}} | |
| − | {{#set: nb pathway associated=12}} | |
| − | {{#set: reconstruction category=annotation|orthology}} | |
| − | {{#set: reconstruction tool=pantograph|pathwaytools}} | |
| − | {{#set: reconstruction comment=n.a}} | |
| − | {{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}} | |
