Difference between revisions of "RXN-10654"

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(Created page with "Category:reaction == Reaction GLUTAMIN-RXN == * common-name: ** glutaminase ** asparagine synthase (glutamine-hydrolyzing) ** imidazoleglycerol-phosphate synthase * ec-num...")
(Created page with "Category:reaction == Reaction RXN-10654 == * common-name: ** 3-oxoacyl-[acyl-carrier-protein] synthase ** 3-oxo-cis-δ7-tetradecenoyl-[acp] synthase * ec-number: ** [...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GLUTAMIN-RXN ==
+
== Reaction RXN-10654 ==
 
* common-name:
 
* common-name:
−
** glutaminase
+
** 3-oxoacyl-[acyl-carrier-protein] synthase
−
** asparagine synthase (glutamine-hydrolyzing)
+
** 3-oxo-cis-δ7-tetradecenoyl-[acp] synthase
−
** imidazoleglycerol-phosphate synthase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.5.1.38 ec-3.5.1.38]
+
** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179]
−
** [http://enzyme.expasy.org/EC/3.5.1.2 ec-3.5.1.2]
+
** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GLN]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[GLT]][c]
+
* 1 [[Cis-Delta5-dodecenoyl-ACPs]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-oxo-cis-D7-tetradecenoyl-ACPs]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[E_subulatus_13006]]
−
* Gene: [[E_subulatus_22039]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_15542]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_18250]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_11888]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_09215]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_02875]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_18595]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_06838]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_02876]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_06834]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_02877]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_13550]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_09532]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_22802]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_00581]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_11886]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_11884]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_09531]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_06835]]
+
* Gene: [[E_subulatus_13005]]
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_09214]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_06837]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_22040]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_15541]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_00580]]
+
* Gene: [[E_subulatus_22266]]
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_09216]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_06836]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_22870]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_12825]]
+
* Gene: [[E_subulatus_22265]]
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_02874]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_11885]]
+
* Gene: [[E_subulatus_13004]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_11887]]
+
* Gene: [[E_subulatus_08948]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5921]], glutaminyl-tRNAgln biosynthesis via transamidation:
+
* [[PWY-6282]], palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate):
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''9''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY490-4]], L-asparagine biosynthesis III (tRNA-dependent):
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[CITRULBIO-PWY]], L-citrulline biosynthesis:
 
−
** '''8''' reactions found over '''8''' reactions in the full pathway
 
−
* [[GLUTAMINDEG-PWY]], L-glutamine degradation I:
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR100030
+
* METANETX-RXN : MNXR116436
−
* LIGAND-RXN:
+
{{#set: common-name=3-oxoacyl-[acyl-carrier-protein] synthase|3-oxo-cis-&delta;7-tetradecenoyl-[acp] synthase}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00256 R00256]
+
{{#set: ec-number=ec-2.3.1.179|ec-2.3.1.41}}
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15890 15890]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P10172 P10172]
 
−
** [http://www.uniprot.org/uniprot/P28492 P28492]
 
−
{{#set: common-name=glutaminase|imidazoleglycerol-phosphate synthase|asparagine synthase (glutamine-hydrolyzing)}}
 
−
{{#set: ec-number=ec-3.5.1.38|ec-3.5.1.2}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=31}}
+
{{#set: nb gene associated=6}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}

Latest revision as of 19:38, 17 March 2021

Reaction RXN-10654

  • common-name:
    • 3-oxoacyl-[acyl-carrier-protein] synthase
    • 3-oxo-cis-δ7-tetradecenoyl-[acp] synthase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6282, palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate):
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR116436
  • Property "Common-name" (as page type) with input value "3-oxoacyl-[acyl-carrier-protein] synthase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
  • Property "Common-name" (as page type) with input value "3-oxo-cis-δ7-tetradecenoyl-[acp] synthase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.





Retrieved from "http://gem-aureme.genouest.org//esubgem/index.php?title=RXN-10654&oldid=50652"