Difference between revisions of "RXN-8244"

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(Created page with "Category:reaction == Reaction UDPGLUCEPIM-RXN == * common-name: ** udp-glucose 4-epimerase * ec-number: ** [http://enzyme.expasy.org/EC/5.1.3.2 ec-5.1.3.2] * direction: **...")
(Created page with "Category:reaction == Reaction RXN-8244 == * common-name: ** n-methylputrescine oxidase * ec-number: ** [http://enzyme.expasy.org/EC/1.4.3.22 ec-1.4.3.22] * direction: ** l...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction UDPGLUCEPIM-RXN ==
+
== Reaction RXN-8244 ==
 
* common-name:
 
* common-name:
** udp-glucose 4-epimerase
+
** n-methylputrescine oxidase
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/5.1.3.2 ec-5.1.3.2]
+
** [http://enzyme.expasy.org/EC/1.4.3.22 ec-1.4.3.22]
 
* direction:
 
* direction:
** reversible
+
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[CPD-12575]][c] '''<=>''' 1 [[CPD-14553]][c]
+
* 1 [[CPD-394]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[CPD-7993]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
* Gene: [[E_subulatus_15511]]
+
* Gene: [[E_subulatus_11639]]
** Category: [[orthology]]
 
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[E_subulatus_05406]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[E_subulatus_22244]]
+
* Gene: [[E_subulatus_19483]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
** Category: [[orthology]]
+
* Gene: [[E_subulatus_13120]]
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[E_subulatus_22246]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[E_subulatus_22245]]
+
* Gene: [[E_subulatus_14646]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[E_subulatus_17872]]
+
* Gene: [[E_subulatus_14645]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_19482]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_14644]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_11640]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-3821]], D-galactose detoxification:
+
* [[PWY-5315]], N-methyl-&Delta;1-pyrrolinium cation biosynthesis:
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
* [[PWY-7328]], superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis:
 
** '''5''' reactions found over '''2''' reactions in the full pathway
 
* [[PWY-6527]], stachyose degradation:
 
** '''6''' reactions found over '''7''' reactions in the full pathway
 
* [[PWY-6397]], mycolyl-arabinogalactan-peptidoglycan complex biosynthesis:
 
** '''1''' reactions found over '''18''' reactions in the full pathway
 
* [[COLANSYN-PWY]], colanic acid building blocks biosynthesis:
 
** '''6''' reactions found over '''1''' reactions in the full pathway
 
* [[PWY-7344]], UDP-&alpha;-D-galactose biosynthesis:
 
** '''1''' reactions found over '''1''' reactions in the full pathway
 
* [[PWY66-422]]:
 
** '''5''' reactions found over '''n.a''' reactions in the full pathway
 
* [[PWY-6317]], D-galactose degradation I (Leloir pathway):
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR109492
* METANETX-RXN : MNXR143428
 
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22171 22171]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
** [http://www.genome.jp/dbget-bin/www_bget?R00291 R00291]
+
** [http://www.genome.jp/dbget-bin/www_bget?R05334 R05334]
* UNIPROT:
+
{{#set: common-name=n-methylputrescine oxidase}}
** [http://www.uniprot.org/uniprot/P35673 P35673]
+
{{#set: ec-number=ec-1.4.3.22}}
** [http://www.uniprot.org/uniprot/P22715 P22715]
+
{{#set: direction=left-to-right}}
** [http://www.uniprot.org/uniprot/P21977 P21977]
+
{{#set: nb gene associated=8}}
** [http://www.uniprot.org/uniprot/P24325 P24325]
+
{{#set: nb pathway associated=1}}
** [http://www.uniprot.org/uniprot/Q9CE66 Q9CE66]
+
{{#set: reconstruction category=annotation}}
** [http://www.uniprot.org/uniprot/Q57664 Q57664]
+
{{#set: reconstruction tool=pathwaytools}}
** [http://www.uniprot.org/uniprot/P55180 P55180]
 
** [http://www.uniprot.org/uniprot/Q9PNG3 Q9PNG3]
 
** [http://www.uniprot.org/uniprot/P56997 P56997]
 
** [http://www.uniprot.org/uniprot/Q59083 Q59083]
 
** [http://www.uniprot.org/uniprot/Q44016 Q44016]
 
** [http://www.uniprot.org/uniprot/Q45291 Q45291]
 
** [http://www.uniprot.org/uniprot/P96995 P96995]
 
** [http://www.uniprot.org/uniprot/P45602 P45602]
 
** [http://www.uniprot.org/uniprot/P18645 P18645]
 
** [http://www.uniprot.org/uniprot/P26503 P26503]
 
** [http://www.uniprot.org/uniprot/P40801 P40801]
 
** [http://www.uniprot.org/uniprot/Q05026 Q05026]
 
** [http://www.uniprot.org/uniprot/P56985 P56985]
 
** [http://www.uniprot.org/uniprot/Q51148 Q51148]
 
** [http://www.uniprot.org/uniprot/Q56093 Q56093]
 
** [http://www.uniprot.org/uniprot/Q42605 Q42605]
 
** [http://www.uniprot.org/uniprot/Q60109 Q60109]
 
** [http://www.uniprot.org/uniprot/P72903 P72903]
 
** [http://www.uniprot.org/uniprot/P72915 P72915]
 
** [http://www.uniprot.org/uniprot/O66256 O66256]
 
** [http://www.uniprot.org/uniprot/O64749 O64749]
 
** [http://www.uniprot.org/uniprot/Q9SN58 Q9SN58]
 
** [http://www.uniprot.org/uniprot/Q8VZ26 Q8VZ26]
 
** [http://www.uniprot.org/uniprot/Q43070 Q43070]
 
** [http://www.uniprot.org/uniprot/Q9T0A7 Q9T0A7]
 
** [http://www.uniprot.org/uniprot/O65780 O65780]
 
** [http://www.uniprot.org/uniprot/O65781 O65781]
 
** [http://www.uniprot.org/uniprot/Q9RMC0 Q9RMC0]
 
** [http://www.uniprot.org/uniprot/P04397 P04397]
 
** [http://www.uniprot.org/uniprot/P09147 P09147]
 
** [http://www.uniprot.org/uniprot/P13226 P13226]
 
** [http://www.uniprot.org/uniprot/P09609 P09609]
 
</div>
 
{{#set: common-name=udp-glucose 4-epimerase}}
 
{{#set: ec-number=ec-5.1.3.2}}
 
{{#set: direction=reversible}}
 
{{#set: nb gene associated=6}}
 
{{#set: nb pathway associated=8}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}
+
{{#set: reconstruction source=ectocarpus_subulatus}}

Latest revision as of 19:38, 17 March 2021

Reaction RXN-8244

  • common-name:
    • n-methylputrescine oxidase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5315, N-methyl-Δ1-pyrrolinium cation biosynthesis:
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR109492
  • LIGAND-RXN: