Difference between revisions of "DIAMINOPIMDECARB-RXN"

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(Created page with "Category:reaction == Reaction ACETOOHBUTREDUCTOISOM-RXN == * common-name: ** (r)-2,3-dihydroxy-3-methylpentanoate:nadp+ oxidoreductase (isomerizing) * ec-number: ** [http:...")
(Created page with "Category:reaction == Reaction DIAMINOPIMDECARB-RXN == * common-name: ** diaminopimelate decarboxylase * ec-number: ** [http://enzyme.expasy.org/EC/4.1.1.20 ec-4.1.1.20] *...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ACETOOHBUTREDUCTOISOM-RXN ==
+
== Reaction DIAMINOPIMDECARB-RXN ==
 
* common-name:
 
* common-name:
−
** (r)-2,3-dihydroxy-3-methylpentanoate:nadp+ oxidoreductase (isomerizing)
+
** diaminopimelate decarboxylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.86 ec-1.1.1.86]
+
** [http://enzyme.expasy.org/EC/4.1.1.20 ec-4.1.1.20]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-ACETO-2-HYDROXY-BUTYRATE]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[1-KETO-2-METHYLVALERATE]][c] '''+''' 1 [[NADP]][c]
+
* 1 [[MESO-DIAMINOPIMELATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[LYS]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_11005]]
+
* Gene: [[E_subulatus_04924]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_21980]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[E_subulatus_04927]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_18066]]
+
* Gene: [[E_subulatus_04925]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_21979]]
+
* Gene: [[E_subulatus_04926]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5103]], L-isoleucine biosynthesis III:
+
* [[PWY-2941]], L-lysine biosynthesis II:
−
** '''4''' reactions found over '''7''' reactions in the full pathway
+
** '''6''' reactions found over '''9''' reactions in the full pathway
−
* [[ILEUSYN-PWY]], L-isoleucine biosynthesis I (from threonine):
+
* [[PWY-2942]], L-lysine biosynthesis III:
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I:
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5097]], L-lysine biosynthesis VI:
 
** '''7''' reactions found over '''7''' reactions in the full pathway
 
** '''7''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR100902
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR97141
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13493 13493]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15102 15102]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00451 R00451]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P06168 P06168]
+
** [http://www.uniprot.org/uniprot/P19572 P19572]
−
** [http://www.uniprot.org/uniprot/P44822 P44822]
+
** [http://www.uniprot.org/uniprot/P0A5M4 P0A5M4]
−
** [http://www.uniprot.org/uniprot/O25097 O25097]
+
** [http://www.uniprot.org/uniprot/P44316 P44316]
−
** [http://www.uniprot.org/uniprot/Q02138 Q02138]
+
** [http://www.uniprot.org/uniprot/P56129 P56129]
−
** [http://www.uniprot.org/uniprot/Q57179 Q57179]
+
** [http://www.uniprot.org/uniprot/O67262 O67262]
−
** [http://www.uniprot.org/uniprot/Q9JTI3 Q9JTI3]
+
** [http://www.uniprot.org/uniprot/Q9JWA6 Q9JWA6]
−
** [http://www.uniprot.org/uniprot/Q9PHN5 Q9PHN5]
+
** [http://www.uniprot.org/uniprot/Q9CG26 Q9CG26]
−
** [http://www.uniprot.org/uniprot/P05793 P05793]
+
** [http://www.uniprot.org/uniprot/P00861 P00861]
−
** [http://www.uniprot.org/uniprot/P38674 P38674]
+
** [http://www.uniprot.org/uniprot/O27390 O27390]
−
** [http://www.uniprot.org/uniprot/Q59500 Q59500]
+
** [http://www.uniprot.org/uniprot/Q9PII5 Q9PII5]
−
** [http://www.uniprot.org/uniprot/Q01292 Q01292]
+
** [http://www.uniprot.org/uniprot/Q58497 Q58497]
−
** [http://www.uniprot.org/uniprot/Q05758 Q05758]
+
** [http://www.uniprot.org/uniprot/O29458 O29458]
−
** [http://www.uniprot.org/uniprot/O82043 O82043]
+
** [http://www.uniprot.org/uniprot/P41023 P41023]
−
** [http://www.uniprot.org/uniprot/P78827 P78827]
+
** [http://www.uniprot.org/uniprot/P23630 P23630]
−
{{#set: common-name=(r)-2,3-dihydroxy-3-methylpentanoate:nadp+ oxidoreductase (isomerizing)}}
+
** [http://www.uniprot.org/uniprot/P09890 P09890]
−
{{#set: ec-number=ec-1.1.1.86}}
+
** [http://www.uniprot.org/uniprot/Q55484 Q55484]
 +
** [http://www.uniprot.org/uniprot/O05321 O05321]
 +
</div>
 +
{{#set: common-name=diaminopimelate decarboxylase}}
 +
{{#set: ec-number=ec-4.1.1.20}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
 
{{#set: nb gene associated=4}}
 
{{#set: nb gene associated=4}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=4}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=ectocarpus_subulatus}}
+
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}

Latest revision as of 19:39, 17 March 2021

Reaction DIAMINOPIMDECARB-RXN

  • common-name:
    • diaminopimelate decarboxylase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-2941, L-lysine biosynthesis II:
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-2942, L-lysine biosynthesis III:
    • 6 reactions found over 7 reactions in the full pathway
  • DAPLYSINESYN-PWY, L-lysine biosynthesis I:
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-5097, L-lysine biosynthesis VI:
    • 7 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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