Difference between revisions of "RXN-16121"

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(Created page with "Category:reaction == Reaction 3-ISOPROPYLMALISOM-RXN == * common-name: ** 3-isopropylmalate dehydratase * direction: ** reversible * synonymous: ** α-isopropylmalate...")
(Created page with "Category:reaction == Reaction RXN-16121 == * ec-number: ** [http://enzyme.expasy.org/EC/3.1.3.4 ec-3.1.3.4] * direction: ** left-to-right == Reaction formula == * 1 CPD-...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3-ISOPROPYLMALISOM-RXN ==
+
== Reaction RXN-16121 ==
−
* common-name:
+
* ec-number:
−
** 3-isopropylmalate dehydratase
+
** [http://enzyme.expasy.org/EC/3.1.3.4 ec-3.1.3.4]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
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* synonymous:
 
−
** α-isopropylmalate isomerase
 
−
** (2r,3s)-3-isopropylmalate hydro-lyase
 
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** β-isopropylmalate dehydratase
 
−
** 3-isopropylmalate hydro-lyase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-9451]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[3-CARBOXY-3-HYDROXY-ISOCAPROATE]][c]
+
* 1 [[CPD-17373]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-17375]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[E_subulatus_16030]]
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* Gene: [[E_subulatus_23912]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_21073]]
+
* Gene: [[E_subulatus_16185]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_16031]]
+
* Gene: [[E_subulatus_16189]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_03963]]
+
* Gene: [[E_subulatus_16184]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[E_subulatus_23911]]
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
−
* Gene: [[E_subulatus_16032]]
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_06616]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_16033]]
+
* Gene: [[E_subulatus_17376]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_21072]]
+
* Gene: [[E_subulatus_16186]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_16187]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_16190]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_06615]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_16188]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered):
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* [[PWY-6453]], stigma estolide biosynthesis:
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** '''5''' reactions found over '''7''' reactions in the full pathway
+
** '''1''' reactions found over '''7''' reactions in the full pathway
−
* [[LEUSYN-PWY]], L-leucine biosynthesis:
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* METANETX-RXN : MNXR119867
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* METANETX-RXN : MNXR100826
+
{{#set: ec-number=ec-3.1.3.4}}
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* RHEA:
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{{#set: direction=left-to-right}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16296 16296]
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{{#set: nb gene associated=12}}
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* LIGAND-RXN:
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{{#set: nb pathway associated=1}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03968 R03968]
+
{{#set: reconstruction category=annotation}}
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* UNIPROT:
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{{#set: reconstruction tool=pathwaytools}}
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** [http://www.uniprot.org/uniprot/Q9PLW1 Q9PLW1]
 
−
** [http://www.uniprot.org/uniprot/Q9JU82 Q9JU82]
 
−
** [http://www.uniprot.org/uniprot/P80858 P80858]
 
−
** [http://www.uniprot.org/uniprot/Q9UZ07 Q9UZ07]
 
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** [http://www.uniprot.org/uniprot/Q9JU81 Q9JU81]
 
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** [http://www.uniprot.org/uniprot/Q58673 Q58673]
 
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** [http://www.uniprot.org/uniprot/Q02144 Q02144]
 
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** [http://www.uniprot.org/uniprot/P44968 P44968]
 
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** [http://www.uniprot.org/uniprot/Q58667 Q58667]
 
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** [http://www.uniprot.org/uniprot/P44438 P44438]
 
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** [http://www.uniprot.org/uniprot/P0A6A6 P0A6A6]
 
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** [http://www.uniprot.org/uniprot/Q9PLW2 Q9PLW2]
 
−
** [http://www.uniprot.org/uniprot/Q44022 Q44022]
 
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** [http://www.uniprot.org/uniprot/Q44023 Q44023]
 
−
** [http://www.uniprot.org/uniprot/Q44427 Q44427]
 
−
** [http://www.uniprot.org/uniprot/P17279 P17279]
 
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** [http://www.uniprot.org/uniprot/P04787 P04787]
 
−
** [http://www.uniprot.org/uniprot/P15717 P15717]
 
−
** [http://www.uniprot.org/uniprot/P18250 P18250]
 
−
** [http://www.uniprot.org/uniprot/Q02142 Q02142]
 
−
** [http://www.uniprot.org/uniprot/P30126 P30126]
 
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** [http://www.uniprot.org/uniprot/P50181 P50181]
 
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** [http://www.uniprot.org/uniprot/P07264 P07264]
 
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** [http://www.uniprot.org/uniprot/P74207 P74207]
 
−
** [http://www.uniprot.org/uniprot/O86534 O86534]
 
−
** [http://www.uniprot.org/uniprot/O86535 O86535]
 
−
</div>
 
−
{{#set: common-name=3-isopropylmalate dehydratase}}
 
−
{{#set: direction=reversible}}
 
−
{{#set: synonymous=&alpha;-isopropylmalate isomerase|(2r,3s)-3-isopropylmalate hydro-lyase|&beta;-isopropylmalate dehydratase|3-isopropylmalate hydro-lyase}}
 
−
{{#set: nb gene associated=7}}
 
−
{{#set: nb pathway associated=2}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}
+
{{#set: reconstruction source=ectocarpus_subulatus}}

Latest revision as of 19:39, 17 March 2021

Reaction RXN-16121

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6453, stigma estolide biosynthesis:
    • 1 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR119867





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