Difference between revisions of "RIBULP3EPIM-RXN"
Jump to navigation
Jump to search
(Created page with "Category:reaction == Reaction RXN-7647 == * common-name: ** chalcone isomerase * ec-number: ** [http://enzyme.expasy.org/EC/5.5.1.6 ec-5.5.1.6] * direction: ** left-to-rig...") |
(Created page with "Category:reaction == Reaction RIBULP3EPIM-RXN == * common-name: ** ribulose-phosphate 3-epimerase * ec-number: ** [http://enzyme.expasy.org/EC/5.1.3.1 ec-5.1.3.1] * direct...") |
||
Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction RIBULP3EPIM-RXN == |
* common-name: | * common-name: | ||
− | ** | + | ** ribulose-phosphate 3-epimerase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/5. | + | ** [http://enzyme.expasy.org/EC/5.1.3.1 ec-5.1.3.1] |
* direction: | * direction: | ||
− | ** | + | ** reversible |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[RIBULOSE-5P]][c] '''<=>''' 1 [[XYLULOSE-5-PHOSPHATE]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[E_subulatus_07361]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | * Gene: [[ | + | *** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
+ | * Gene: [[E_subulatus_18114]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): |
− | ** '''3''' reactions found over '''5''' reactions in the full pathway | + | ** '''11''' reactions found over '''12''' reactions in the full pathway |
+ | * [[P21-PWY]], pentose phosphate pathway (partial): | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch) I: | ||
+ | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: | ||
+ | ** '''12''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[PWY-5723]], Rubisco shunt: | ||
+ | ** '''9''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[P124-PWY]], Bifidobacterium shunt: | ||
+ | ** '''11''' reactions found over '''15''' reactions in the full pathway | ||
+ | * [[P122-PWY]], heterolactic fermentation: | ||
+ | ** '''14''' reactions found over '''18''' reactions in the full pathway | ||
+ | * [[PWY-1861]], formaldehyde assimilation II (assimilatory RuMP Cycle): | ||
+ | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
− | * METANETX-RXN : | + | * METANETX-RXN : MNXR104083 |
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13680 13680] | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R01529 R01529] |
− | {{#set: common-name= | + | * UNIPROT: |
− | {{#set: ec-number=ec-5. | + | ** [http://www.uniprot.org/uniprot/P40117 P40117] |
− | {{#set: direction= | + | ** [http://www.uniprot.org/uniprot/Q9CEB9 Q9CEB9] |
+ | ** [http://www.uniprot.org/uniprot/P0AG07 P0AG07] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PI57 Q9PI57] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JUA9 Q9JUA9] | ||
+ | ** [http://www.uniprot.org/uniprot/P45455 P45455] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43157 Q43157] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43843 Q43843] | ||
+ | ** [http://www.uniprot.org/uniprot/P74061 P74061] | ||
+ | ** [http://www.uniprot.org/uniprot/O23782 O23782] | ||
+ | ** [http://www.uniprot.org/uniprot/P51012 P51012] | ||
+ | {{#set: common-name=ribulose-phosphate 3-epimerase}} | ||
+ | {{#set: ec-number=ec-5.1.3.1}} | ||
+ | {{#set: direction=reversible}} | ||
{{#set: nb gene associated=2}} | {{#set: nb gene associated=2}} | ||
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=8}} |
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}} | {{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}} |
Latest revision as of 19:40, 17 March 2021
Contents
Reaction RIBULP3EPIM-RXN
- common-name:
- ribulose-phosphate 3-epimerase
- ec-number:
- direction:
- reversible
Reaction formula
- 1 RIBULOSE-5P[c] <=> 1 XYLULOSE-5-PHOSPHATE[c]
Gene(s) associated with this reaction
- Gene: E_subulatus_07361
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_a.taliana.aragem, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_a.taliana.aragem, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: E_subulatus_18114
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_a.taliana.aragem, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_a.taliana.aragem, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle):
- 11 reactions found over 12 reactions in the full pathway
- P21-PWY, pentose phosphate pathway (partial):
- 3 reactions found over 3 reactions in the full pathway
- NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch) I:
- 5 reactions found over 5 reactions in the full pathway
- CALVIN-PWY, Calvin-Benson-Bassham cycle:
- 12 reactions found over 13 reactions in the full pathway
- PWY-5723, Rubisco shunt:
- 9 reactions found over 10 reactions in the full pathway
- P124-PWY, Bifidobacterium shunt:
- 11 reactions found over 15 reactions in the full pathway
- P122-PWY, heterolactic fermentation:
- 14 reactions found over 18 reactions in the full pathway
- PWY-1861, formaldehyde assimilation II (assimilatory RuMP Cycle):
- 7 reactions found over 9 reactions in the full pathway
Reconstruction information
- category: annotation; source: ectocarpus_subulatus; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_a.taliana.aragem; tool: pantograph; comment: n.a
External links
- METANETX-RXN : MNXR104083
- RHEA:
- LIGAND-RXN:
- UNIPROT: