Difference between revisions of "RIBOFLAVINKIN-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction NAD-SYNTH-GLN-RXN == * common-name: ** nad+ synthetase, glutamine dependent * ec-number: ** [http://enzyme.expasy.org/EC/6.3.5.1 ec-6.3.5.1]...")
(Created page with "Category:reaction == Reaction RIBOFLAVINKIN-RXN == * common-name: ** riboflavin kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.26 ec-2.7.1.26] * direction: ** l...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction NAD-SYNTH-GLN-RXN ==
+
== Reaction RIBOFLAVINKIN-RXN ==
 
* common-name:
 
* common-name:
−
** nad+ synthetase, glutamine dependent
+
** riboflavin kinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.3.5.1 ec-6.3.5.1]
+
** [http://enzyme.expasy.org/EC/2.7.1.26 ec-2.7.1.26]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[DEAMIDO-NAD]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[RIBOFLAVIN]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[FMN]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_02877]]
+
* Gene: [[E_subulatus_07409]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_15521]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_02875]]
+
* Gene: [[E_subulatus_07408]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_02876]]
+
* Gene: [[E_subulatus_15520]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_12139]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[E_subulatus_02874]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7761]], NAD salvage pathway II (PNC IV cycle):
+
* [[PWY-6168]], flavin biosynthesis III (fungi):
−
** '''3''' reactions found over '''5''' reactions in the full pathway
+
** '''6''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-5381]], NAD salvage (plants):
+
* [[PWY-5523]], 5,6-dimethylbenzimidazole biosynthesis I (aerobic):
−
** '''6''' reactions found over '''11''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
−
* [[PYRIDNUCSYN-PWY]], NAD de novo biosynthesis I (from aspartate):
+
* [[PWY-7863]], roseoflavin biosynthesis:
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''1''' reactions found over '''7''' reactions in the full pathway
−
* [[PYRIDNUCSAL-PWY]], NAD salvage pathway I (PNC VI cycle):
+
* [[PWY66-366]], flavin salvage:
−
** '''4''' reactions found over '''7''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY3O-4107]], NAD salvage pathway V (PNC V cycle):
+
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants):
−
** '''3''' reactions found over '''5''' reactions in the full pathway
+
** '''7''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-5653]], NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde:
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR97678
+
* METANETX-RXN : MNXR103429
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24385 24385]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14358 14358]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00257 R00257]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00549 R00549]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q9PPB0 Q9PPB0]
+
** [http://www.uniprot.org/uniprot/Q9JVY5 Q9JVY5]
−
** [http://www.uniprot.org/uniprot/Q9JTY7 Q9JTY7]
+
** [http://www.uniprot.org/uniprot/Q9PHS7 Q9PHS7]
−
** [http://www.uniprot.org/uniprot/Q9CGJ4 Q9CGJ4]
+
** [http://www.uniprot.org/uniprot/Q59263 Q59263]
−
** [http://www.uniprot.org/uniprot/Q9Z4V9 Q9Z4V9]
+
{{#set: common-name=riboflavin kinase}}
−
{{#set: common-name=nad+ synthetase, glutamine dependent}}
+
{{#set: ec-number=ec-2.7.1.26}}
−
{{#set: ec-number=ec-6.3.5.1}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=5}}
−
{{#set: nb pathway associated=6}}
+
{{#set: nb pathway associated=5}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}
 
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}

Latest revision as of 19:41, 17 March 2021

Reaction RIBOFLAVINKIN-RXN

  • common-name:
    • riboflavin kinase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6168, flavin biosynthesis III (fungi):
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-5523, 5,6-dimethylbenzimidazole biosynthesis I (aerobic):
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-7863, roseoflavin biosynthesis:
    • 1 reactions found over 7 reactions in the full pathway
  • PWY66-366, flavin salvage:
    • 2 reactions found over 2 reactions in the full pathway
  • RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants):
    • 7 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.genouest.org//esubgem/index.php?title=RIBOFLAVINKIN-RXN&oldid=52101"