Difference between revisions of "DTMPKI-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction 1.1.1.8-RXN == * common-name: ** glycerol 3-phosphate dehydrogenase ** glycerol-3-phosphate dehydrogenase [nad+] * ec-number: ** [http://enzy...")
(Created page with "Category:reaction == Reaction DTMPKI-RXN == * common-name: ** dtmp kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.4.12 ec-2.7.4.12] ** [http://enzyme.expasy.org/E...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 1.1.1.8-RXN ==
+
== Reaction DTMPKI-RXN ==
 
* common-name:
 
* common-name:
−
** glycerol 3-phosphate dehydrogenase
+
** dtmp kinase
−
** glycerol-3-phosphate dehydrogenase [nad+]
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.8 ec-1.1.1.8]
+
** [http://enzyme.expasy.org/EC/2.7.4.12 ec-2.7.4.12]
 +
** [http://enzyme.expasy.org/EC/2.7.4.13 ec-2.7.4.13]
 +
** [http://enzyme.expasy.org/EC/2.7.4.9 ec-2.7.4.9]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DIHYDROXY-ACETONE-PHOSPHATE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[GLYCEROL-3P]][c] '''+''' 1 [[NAD]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[TMP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[TDP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[E_subulatus_14023]]
−
* Gene: [[E_subulatus_06480]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_11786]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_04110]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_04109]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_07295]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_06479]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_04111]]
+
* Gene: [[E_subulatus_14022]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_11787]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_06481]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_19994]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_07294]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_06478]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7411]], phosphatidate biosynthesis (yeast):
+
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''12''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY-6118]], glycerol-3-phosphate shuttle:
+
* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II:
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''4''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-7385]], 1,3-propanediol biosynthesis (engineered):
+
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III:
−
** '''5''' reactions found over '''9''' reactions in the full pathway
+
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I:
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP:
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation:
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV:
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR99876
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR97804
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00842 R00842]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02094 R02094]
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13518 13518]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P13707 P13707]
+
** [http://www.uniprot.org/uniprot/Q57741 Q57741]
−
** [http://www.uniprot.org/uniprot/P08507 P08507]
+
** [http://www.uniprot.org/uniprot/Q9PPF3 Q9PPF3]
−
** [http://www.uniprot.org/uniprot/O25614 O25614]
+
** [http://www.uniprot.org/uniprot/P0A720 P0A720]
−
** [http://www.uniprot.org/uniprot/Q9JWH0 Q9JWH0]
+
** [http://www.uniprot.org/uniprot/Q8X8H7 Q8X8H7]
−
** [http://www.uniprot.org/uniprot/P43798 P43798]
+
** [http://www.uniprot.org/uniprot/Q9JVE7 Q9JVE7]
−
** [http://www.uniprot.org/uniprot/O29390 O29390]
+
** [http://www.uniprot.org/uniprot/P33803 P33803]
−
** [http://www.uniprot.org/uniprot/P46919 P46919]
+
** [http://www.uniprot.org/uniprot/P42490 P42490]
−
** [http://www.uniprot.org/uniprot/P07735 P07735]
+
** [http://www.uniprot.org/uniprot/P00572 P00572]
−
** [http://www.uniprot.org/uniprot/P13706 P13706]
+
** [http://www.uniprot.org/uniprot/Q80HT9 Q80HT9]
−
** [http://www.uniprot.org/uniprot/Q00055 Q00055]
+
** [http://www.uniprot.org/uniprot/P68693 P68693]
−
** [http://www.uniprot.org/uniprot/P34517 P34517]
+
** [http://www.uniprot.org/uniprot/P23919 P23919]
−
** [http://www.uniprot.org/uniprot/P0A6S7 P0A6S7]
+
** [http://www.uniprot.org/uniprot/P36590 P36590]
−
** [http://www.uniprot.org/uniprot/P21695 P21695]
+
** [http://www.uniprot.org/uniprot/Q9RA29 Q9RA29]
−
** [http://www.uniprot.org/uniprot/P41911 P41911]
+
** [http://www.uniprot.org/uniprot/O81650 O81650]
−
** [http://www.uniprot.org/uniprot/P90593 P90593]
+
</div>
−
{{#set: common-name=glycerol 3-phosphate dehydrogenase|glycerol-3-phosphate dehydrogenase [nad+]}}
+
{{#set: common-name=dtmp kinase}}
−
{{#set: ec-number=ec-1.1.1.8}}
+
{{#set: ec-number=ec-2.7.4.12|ec-2.7.4.9|ec-2.7.4.13}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=12}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=7}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}

Latest revision as of 19:41, 17 March 2021

Reaction DTMPKI-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
    • 12 reactions found over 13 reactions in the full pathway
  • PWY-7187, pyrimidine deoxyribonucleotides de novo biosynthesis II:
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-6545, pyrimidine deoxyribonucleotides de novo biosynthesis III:
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-7184, pyrimidine deoxyribonucleotides de novo biosynthesis I:
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7210, pyrimidine deoxyribonucleotides biosynthesis from CTP:
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-7197, pyrimidine deoxyribonucleotide phosphorylation:
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7198, pyrimidine deoxyribonucleotides de novo biosynthesis IV:
    • 6 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.genouest.org//esubgem/index.php?title=DTMPKI-RXN&oldid=52280"