Difference between revisions of "RXN-12263"
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(Created page with "Category:reaction == Reaction ALDOSE1EPIM-RXN == * direction: ** reversible * ec_number: ** ec-5.1.3.3 == Reaction formula == * 1 GALACTOSE[c] '''<=>''' 1 ALPHA-D-GA...") |
(Created page with "Category:reaction == Reaction RXN-12263 == * common-name: ** presqualene diphosphate synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.103 ec-2.5.1.103] * direct...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction RXN-12263 == |
+ | * common-name: | ||
+ | ** presqualene diphosphate synthase | ||
+ | * ec-number: | ||
+ | ** [http://enzyme.expasy.org/EC/2.5.1.103 ec-2.5.1.103] | ||
* direction: | * direction: | ||
− | ** | + | ** left-to-right |
− | |||
− | |||
== Reaction formula == | == Reaction formula == | ||
− | * | + | * 2 [[FARNESYL-PP]][c] '''=>''' 1 [[CPD-465]][c] '''+''' 1 [[PPI]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
+ | * Gene: [[E_subulatus_00110]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[E_subulatus_00109]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[ | + | * [[PWY-5875]], staphyloxanthin biosynthesis: |
− | ** ''' | + | ** '''1''' reactions found over '''9''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-6767]], 4,4'-diapolycopenedioate biosynthesis: |
− | ** ''' | + | ** '''1''' reactions found over '''9''' reactions in the full pathway |
+ | * [[PWY-6105]], botryococcenes and methylated squalene biosynthesis: | ||
+ | ** '''2''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-7072]], hopanoid biosynthesis (bacteria): | ||
+ | ** '''1''' reactions found over '''14''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
− | * category: [[ | + | * category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a |
+ | * category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
− | * METANETX-RXN : | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | * | + | * METANETX-RXN : MNXR103264 |
− | ** [http://www. | + | * LIGAND-RXN: |
− | {{#set: | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00702 R00702] |
− | {{#set: | + | * UNIPROT: |
− | {{#set: nb gene associated= | + | ** [http://www.uniprot.org/uniprot/O69445 O69445] |
− | {{#set: nb pathway associated= | + | ** [http://www.uniprot.org/uniprot/P36596 P36596] |
− | {{#set: reconstruction category= | + | ** [http://www.uniprot.org/uniprot/O65688 O65688] |
− | {{#set: reconstruction tool= | + | ** [http://www.uniprot.org/uniprot/O23118 O23118] |
− | {{#set: reconstruction comment= | + | ** [http://www.uniprot.org/uniprot/O22107 O22107] |
− | {{#set: reconstruction source= | + | ** [http://www.uniprot.org/uniprot/Q40472 Q40472] |
+ | ** [http://www.uniprot.org/uniprot/O22106 O22106] | ||
+ | ** [http://www.uniprot.org/uniprot/P53800 P53800] | ||
+ | ** [http://www.uniprot.org/uniprot/P53799 P53799] | ||
+ | ** [http://www.uniprot.org/uniprot/P53798 P53798] | ||
+ | ** [http://www.uniprot.org/uniprot/P29704 P29704] | ||
+ | ** [http://www.uniprot.org/uniprot/Q04903 Q04903] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42761 Q42761] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42760 Q42760] | ||
+ | ** [http://www.uniprot.org/uniprot/P37268 P37268] | ||
+ | ** [http://www.uniprot.org/uniprot/Q02769 Q02769] | ||
+ | </div> | ||
+ | {{#set: common-name=presqualene diphosphate synthase}} | ||
+ | {{#set: ec-number=ec-2.5.1.103}} | ||
+ | {{#set: direction=left-to-right}} | ||
+ | {{#set: nb gene associated=2}} | ||
+ | {{#set: nb pathway associated=4}} | ||
+ | {{#set: reconstruction category=annotation|orthology}} | ||
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
+ | {{#set: reconstruction comment=n.a}} | ||
+ | {{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}} |
Latest revision as of 19:41, 17 March 2021
Contents
Reaction RXN-12263
- common-name:
- presqualene diphosphate synthase
- ec-number:
- direction:
- left-to-right
Reaction formula
- 2 FARNESYL-PP[c] => 1 CPD-465[c] + 1 PPI[c]
Gene(s) associated with this reaction
- Gene: E_subulatus_00110
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: E_subulatus_00109
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_a.taliana.aragem, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-5875, staphyloxanthin biosynthesis:
- 1 reactions found over 9 reactions in the full pathway
- PWY-6767, 4,4'-diapolycopenedioate biosynthesis:
- 1 reactions found over 9 reactions in the full pathway
- PWY-6105, botryococcenes and methylated squalene biosynthesis:
- 2 reactions found over 9 reactions in the full pathway
- PWY-7072, hopanoid biosynthesis (bacteria):
- 1 reactions found over 14 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_a.taliana.aragem; tool: pantograph; comment: n.a
- category: annotation; source: ectocarpus_subulatus; tool: pathwaytools; comment: n.a
External links