Difference between revisions of "RXN-2562"

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(Created page with "Category:reaction == Reaction RXN0-5038 == * common-name: ** 3',5'-cyclic-amp phosphodiesterase * ec-number: ** [http://enzyme.expasy.org/EC/3.1.4.53 ec-3.1.4.53] * direct...")
(Created page with "Category:reaction == Reaction RXN-2562 == * ec-number: ** [http://enzyme.expasy.org/EC/2.1.1.95 ec-2.1.1.95] * direction: ** left-to-right == Reaction formula == * 1 DEL...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction RXN0-5038 ==
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== Reaction RXN-2562 ==
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* common-name:
 
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** 3',5'-cyclic-amp phosphodiesterase
 
 
* ec-number:
 
* ec-number:
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** [http://enzyme.expasy.org/EC/3.1.4.53 ec-3.1.4.53]
+
** [http://enzyme.expasy.org/EC/2.1.1.95 ec-2.1.1.95]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[CAMP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PROTON]][c]
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* 1 [[DELTA-TOCOPHEROL]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[BETA-TOCOPHEROL]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* Gene: [[EsuBft981_2a]]
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* Gene: [[E_subulatus_22962]]
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** Category: [[manual]]
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** Category: [[annotation]]
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*** Source: [[esub_adding_annot_form]], Tool: [[unknown-tool]], Assignment: n.a, Comment: annotation
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[E_subulatus_25654]]
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* Gene: [[E_subulatus_22961]]
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** Category: [[orthology]]
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** Category: [[annotation]]
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*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[E_subulatus_09252]]
 
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** Category: [[annotation]]
 
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[E_subulatus_09251]]
 
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** Category: [[annotation]]
 
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[E_subulatus_09254]]
 
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** Category: [[annotation]]
 
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[E_subulatus_09250]]
 
−
** Category: [[annotation]]
 
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[E_subulatus_09253]]
 
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** Category: [[annotation]]
 
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-1422]], vitamin E biosynthesis (tocopherols):
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[manual]]; source: [[esub_adding_annot_form]]; tool: [[curation]]; comment: annotation
 
== External links  ==
 
== External links  ==
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* METANETX-RXN : MNXR95886
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* METANETX-RXN : MNXR104911
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25278 25278]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R00191 R00191]
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** [http://www.genome.jp/dbget-bin/www_bget?R07504 R07504]
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{{#set: common-name=3',5'-cyclic-amp phosphodiesterase}}
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{{#set: ec-number=ec-2.1.1.95}}
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{{#set: ec-number=ec-3.1.4.53}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
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{{#set: nb gene associated=7}}
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{{#set: nb gene associated=2}}
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{{#set: nb pathway associated=0}}
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{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation}}
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{{#set: reconstruction category=manual|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction tool=pantograph|curation}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction comment=annotation|n.a}}
−
{{#set: reconstruction source=ectocarpus_subulatus}}
+
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|esub_adding_annot_form}}

Latest revision as of 19:41, 17 March 2021

Reaction RXN-2562

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-1422, vitamin E biosynthesis (tocopherols):
    • 7 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR104911
  • LIGAND-RXN:





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