Difference between revisions of "2.5.1.32-RXN"

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(Created page with "Category:reaction == Reaction OXALODECARB-RXN == * common-name: ** oxaloacetate decarboxylase * ec-number: ** [http://enzyme.expasy.org/EC/4.1.1.112 ec-4.1.1.112] * direct...")
(Created page with "Category:reaction == Reaction 2.5.1.32-RXN == * direction: ** left-to-right * synonymous: ** psase ** geranylgeranyl-diphosphate geranylgeranyltransferase == Reaction form...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction OXALODECARB-RXN ==
+
== Reaction 2.5.1.32-RXN ==
−
* common-name:
 
−
** oxaloacetate decarboxylase
 
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/4.1.1.112 ec-4.1.1.112]
 
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* synonymous:
 +
** psase
 +
** geranylgeranyl-diphosphate geranylgeranyltransferase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PYRUVATE]][c]
+
* 2 [[GERANYLGERANYL-PP]][c] '''=>''' 1 [[CPD-464]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_23248]]
+
* Gene: [[E_subulatus_18355]]
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_23249]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_23247]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_23246]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_23250]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
* [[PWY-6475]], trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria):
−
** '''1''' reactions found over '''8''' reactions in the full pathway
+
** '''2''' reactions found over '''8''' reactions in the full pathway
−
** '''1''' reactions found over '''8''' reactions in the full pathway
+
* [[PWY-6287]], neurosporene biosynthesis:
−
** '''1''' reactions found over '''9''' reactions in the full pathway
+
** '''2''' reactions found over '''5''' reactions in the full pathway
−
** '''1''' reactions found over '''9''' reactions in the full pathway
+
* [[PWY-7943]], lycopadiene biosynthesis:
−
** '''1''' reactions found over '''6''' reactions in the full pathway
+
** '''1''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* DB : RHEA
+
* METANETX-RXN : MNXR102655
−
* ID : 15641
+
* RHEA:
−
{{#set: common-name=oxaloacetate decarboxylase}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22297 22297]
−
{{#set: ec-number=ec-4.1.1.112}}
+
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R02065 R02065]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P53609 P53609]
 +
** [http://www.uniprot.org/uniprot/P37295 P37295]
 +
** [http://www.uniprot.org/uniprot/P22872 P22872]
 +
** [http://www.uniprot.org/uniprot/P53610 P53610]
 +
** [http://www.uniprot.org/uniprot/P53612 P53612]
 +
** [http://www.uniprot.org/uniprot/P17056 P17056]
 +
** [http://www.uniprot.org/uniprot/P49293 P49293]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=5}}
+
{{#set: synonymous=psase|geranylgeranyl-diphosphate geranylgeranyltransferase}}
 +
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=3}}
 
{{#set: nb pathway associated=3}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}

Latest revision as of 19:41, 17 March 2021

Reaction 2.5.1.32-RXN

  • direction:
    • left-to-right
  • synonymous:
    • psase
    • geranylgeranyl-diphosphate geranylgeranyltransferase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6475, trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria):
    • 2 reactions found over 8 reactions in the full pathway
  • PWY-6287, neurosporene biosynthesis:
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7943, lycopadiene biosynthesis:
    • 1 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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