Difference between revisions of "3-OXOACYL-ACP-SYNTH-BASE-RXN"

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(Created page with "Category:reaction == Reaction GALACTURIDYLYLTRANS-RXN == * direction: ** reversible * ec_number: ** ec-2.7.7.12 == Reaction formula == * 1 CPD-12575[c] '''+''' 1 GAL...")
(Created page with "Category:reaction == Reaction 3-OXOACYL-ACP-SYNTH-BASE-RXN == * common-name: ** acetoacetyl-[acp] synthase ** 3-oxoacyl-[acyl-carrier-protein] synthase * ec-number: ** [ht...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GALACTURIDYLYLTRANS-RXN ==
+
== Reaction 3-OXOACYL-ACP-SYNTH-BASE-RXN ==
 +
* common-name:
 +
** acetoacetyl-[acp] synthase
 +
** 3-oxoacyl-[acyl-carrier-protein] synthase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179]
 +
** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
 +
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* ec_number:
 
−
** ec-2.7.7.12
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-12575]][c] '''+''' 1 [[GALACTOSE-1P]][c] '''<=>''' 1 [[CPD-14553]][c] '''+''' 1 [[GLC-1-P]][c]
+
* 1 [[ACETYL-ACP]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[ACP]][c] '''+''' 1 [[Acetoacetyl-ACPs]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[E_subulatus_13005]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[E_subulatus_08948]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[E_subulatus_15037]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_22266]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_13006]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_22265]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_15038]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_13004]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6317]], D-galactose degradation I (Leloir pathway):
+
* [[PWY-5965]]:
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''1''' reactions found over '''n.a''' reactions in the full pathway
−
* [[PWY66-422]]:
+
* [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast):
−
** '''5''' reactions found over '''n.a''' reactions in the full pathway
+
** '''9''' reactions found over '''11''' reactions in the full pathway
−
* [[PWY-6527]], stachyose degradation:
+
* [[PWY-5966]]:
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
** '''2''' reactions found over '''n.a''' reactions in the full pathway
 +
* [[FASYN-INITIAL-PWY]], superpathway of fatty acid biosynthesis initiation (E. coli):
 +
** '''5''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[esub_adding_annot_form]]; tool: [[curation]]; comment: annotation
+
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR143436
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13992 13992]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00955 R00955]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04355 R04355]
 +
* METANETX-RXN : MNXR100912
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P43424 P43424]
+
** [http://www.uniprot.org/uniprot/P23902 P23902]
−
** [http://www.uniprot.org/uniprot/P31764 P31764]
+
** [http://www.uniprot.org/uniprot/P0A6R0 P0A6R0]
−
** [http://www.uniprot.org/uniprot/P07902 P07902]
+
** [http://www.uniprot.org/uniprot/P49327 P49327]
−
** [http://www.uniprot.org/uniprot/P08431 P08431]
+
** [http://www.uniprot.org/uniprot/P43710 P43710]
−
** [http://www.uniprot.org/uniprot/P09148 P09148]
+
** [http://www.uniprot.org/uniprot/Q9HYR2 Q9HYR2]
−
** [http://www.uniprot.org/uniprot/P13212 P13212]
+
** [http://www.uniprot.org/uniprot/O67612 O67612]
−
** [http://www.uniprot.org/uniprot/P09580 P09580]
+
** [http://www.uniprot.org/uniprot/P20582 P20582]
−
{{#set: direction=reversible}}
+
** [http://www.uniprot.org/uniprot/Q9JT63 Q9JT63]
−
{{#set: ec_number=ec-2.7.7.12}}
+
** [http://www.uniprot.org/uniprot/Q9JW56 Q9JW56]
−
{{#set: nb gene associated=0}}
+
** [http://www.uniprot.org/uniprot/Q9PMZ6 Q9PMZ6]
−
{{#set: nb pathway associated=3}}
+
** [http://www.uniprot.org/uniprot/P43711 P43711]
−
{{#set: reconstruction category=manual}}
+
** [http://www.uniprot.org/uniprot/O25284 O25284]
−
{{#set: reconstruction tool=curation}}
+
** [http://www.uniprot.org/uniprot/Q9JX65 Q9JX65]
−
{{#set: reconstruction comment=annotation}}
+
** [http://www.uniprot.org/uniprot/O34340 O34340]
−
{{#set: reconstruction source=esub_adding_annot_form}}
+
** [http://www.uniprot.org/uniprot/Q9PI63 Q9PI63]
 +
** [http://www.uniprot.org/uniprot/P0AAI5 P0AAI5]
 +
** [http://www.uniprot.org/uniprot/Q07510 Q07510]
 +
** [http://www.uniprot.org/uniprot/Q06097 Q06097]
 +
** [http://www.uniprot.org/uniprot/P41175 P41175]
 +
** [http://www.uniprot.org/uniprot/P31176 P31176]
 +
** [http://www.uniprot.org/uniprot/Q40027 Q40027]
 +
** [http://www.uniprot.org/uniprot/Q40028 Q40028]
 +
** [http://www.uniprot.org/uniprot/P73283 P73283]
 +
** [http://www.uniprot.org/uniprot/P0A953 P0A953]
 +
** [http://www.uniprot.org/uniprot/O64485 O64485]
 +
** [http://www.uniprot.org/uniprot/O65677 O65677]
 +
** [http://www.uniprot.org/uniprot/Q39310 Q39310]
 +
** [http://www.uniprot.org/uniprot/O23738 O23738]
 +
** [http://www.uniprot.org/uniprot/Q41134 Q41134]
 +
** [http://www.uniprot.org/uniprot/Q41135 Q41135]
 +
** [http://www.uniprot.org/uniprot/Q54208 Q54208]
 +
** [http://www.uniprot.org/uniprot/O54440 O54440]
 +
** [http://www.uniprot.org/uniprot/P55338 P55338]
 +
** [http://www.uniprot.org/uniprot/Q9RA31 Q9RA31]
 +
** [http://www.uniprot.org/uniprot/P12276 P12276]
 +
** [http://www.uniprot.org/uniprot/P12785 P12785]
 +
</div>
 +
{{#set: common-name=acetoacetyl-[acp] synthase|3-oxoacyl-[acyl-carrier-protein] synthase}}
 +
{{#set: ec-number=ec-2.3.1.85|ec-2.3.1.86|ec-2.3.1.179|ec-2.3.1.41}}
 +
{{#set: direction=left-to-right}}
 +
{{#set: nb gene associated=8}}
 +
{{#set: nb pathway associated=4}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}

Latest revision as of 19:38, 17 March 2021

Reaction 3-OXOACYL-ACP-SYNTH-BASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5965:
    • 1 reactions found over n.a reactions in the full pathway
  • PWY-7388, octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast):
    • 9 reactions found over 11 reactions in the full pathway
  • PWY-5966:
    • 2 reactions found over n.a reactions in the full pathway
  • FASYN-INITIAL-PWY, superpathway of fatty acid biosynthesis initiation (E. coli):
    • 5 reactions found over 2 reactions in the full pathway

Reconstruction information

External links

  • Property "Common-name" (as page type) with input value "acetoacetyl-[acp] synthase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
  • Property "Common-name" (as page type) with input value "3-oxoacyl-[acyl-carrier-protein] synthase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.





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