Difference between revisions of "3.5.1.88-RXN"

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(Created page with "Category:reaction == Reaction DTDPDEHYRHAMREDUCT-RXN == * common-name: ** dtdp-α-l-rhamnose synthase * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.133 ec-1.1.1....")
(Created page with "Category:reaction == Reaction 3.5.1.88-RXN == * common-name: ** peptide deformylase * ec-number: ** [http://enzyme.expasy.org/EC/3.5.1.88 ec-3.5.1.88] * direction: ** left...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DTDPDEHYRHAMREDUCT-RXN ==
+
== Reaction 3.5.1.88-RXN ==
 
* common-name:
 
* common-name:
−
** dtdp-α-l-rhamnose synthase
+
** peptide deformylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.133 ec-1.1.1.133]
+
** [http://enzyme.expasy.org/EC/3.5.1.88 ec-3.5.1.88]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DTDP-RHAMNOSE]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[DTDP-DEOH-DEOXY-MANNOSE]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[FORMYL-L-METHIONYL-PEPTIDE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[FORMATE]][c] '''+''' 1 [[METHIONYL-PEPTIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_02254]]
+
* Gene: [[E_subulatus_16900]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[DTDPRHAMSYN-PWY]], dTDP-&beta;-L-rhamnose biosynthesis:
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR104760
+
* METANETX-RXN : MNXR109727
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21796 21796]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24421 24421]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02777 R02777]
+
** [http://www.genome.jp/dbget-bin/www_bget?R05635 R05635]
−
* UNIPROT:
+
{{#set: common-name=peptide deformylase}}
−
** [http://www.uniprot.org/uniprot/Q9JV74 Q9JV74]
+
{{#set: ec-number=ec-3.5.1.88}}
−
** [http://www.uniprot.org/uniprot/P37760 P37760]
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/Q46769 Q46769]
 
−
** [http://www.uniprot.org/uniprot/O33664 O33664]
 
−
** [http://www.uniprot.org/uniprot/O66251 O66251]
 
−
{{#set: common-name=dtdp-&alpha;-l-rhamnose synthase}}
 
−
{{#set: ec-number=ec-1.1.1.133}}
 
−
{{#set: direction=reversible}}
 
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=0}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}

Latest revision as of 19:40, 17 March 2021

Reaction 3.5.1.88-RXN

  • common-name:
    • peptide deformylase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR109727
  • RHEA:
  • LIGAND-RXN:





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