Difference between revisions of "4-COUMARATE--COA-LIGASE-RXN"

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(Created page with "Category:reaction == Reaction RXN-10664 == * common-name: ** palmitoyl-coa 9-desaturase * ec-number: ** [http://enzyme.expasy.org/EC/1.14.19.1 ec-1.14.19.1] * direction: *...")
(Created page with "Category:reaction == Reaction 4-COUMARATE--COA-LIGASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/6.2.1.12 ec-6.2.1.12] * direction: ** left-to-right == Reaction f...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-10664 ==
+
== Reaction 4-COUMARATE--COA-LIGASE-RXN ==
−
* common-name:
 
−
** palmitoyl-coa 9-desaturase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.14.19.1 ec-1.14.19.1]
+
** [http://enzyme.expasy.org/EC/6.2.1.12 ec-6.2.1.12]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 2 [[FERROCYTOCHROME-B5]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PALMITYL-COA]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[CPD-10269]][c] '''+''' 2 [[FERRICYTOCHROME-B5]][c] '''+''' 2 [[WATER]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[COUMARATE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[P-COUMAROYL-COA]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[E_subulatus_21143]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
== Pathway(s)  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* Gene: [[E_subulatus_05429]]
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* [[PWY-5048]], rosmarinic acid biosynthesis I:
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** Category: [[annotation]]
+
** '''2''' reactions found over '''10''' reactions in the full pathway
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
* [[PWY1F-FLAVSYN]], flavonoid biosynthesis:
−
* Gene: [[E_subulatus_17810]]
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
** Category: [[annotation]]
+
* [[PWY-7897]], flavonoid di-C-glucosylation:
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
** '''3''' reactions found over '''15''' reactions in the full pathway
−
* Gene: [[E_subulatus_17811]]
+
* [[PWY-8002]], 4-coumarate degradation (aerobic):
−
** Category: [[annotation]]
+
** '''2''' reactions found over '''5''' reactions in the full pathway
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
* [[PWY-7046]], 4-coumarate degradation (anaerobic):
−
* Gene: [[E_subulatus_05431]]
+
** '''2''' reactions found over '''6''' reactions in the full pathway
−
** Category: [[annotation]]
+
* [[PWY-6982]], umbelliferone biosynthesis:
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
** '''1''' reactions found over '''3''' reactions in the full pathway
−
* Gene: [[E_subulatus_08000]]
+
* [[PWY-7398]], coumarins biosynthesis (engineered):
−
** Category: [[annotation]]
+
** '''3''' reactions found over '''13''' reactions in the full pathway
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
* [[PWY-6320]], phaselate biosynthesis:
−
* Gene: [[E_subulatus_08001]]
+
** '''1''' reactions found over '''5''' reactions in the full pathway
−
** Category: [[annotation]]
+
* [[PWY-361]], phenylpropanoid biosynthesis:
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
** '''6''' reactions found over '''15''' reactions in the full pathway
−
* Gene: [[E_subulatus_05430]]
+
* [[PWY-7397]], naringenin biosynthesis (engineered):
−
** Category: [[annotation]]
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
* [[PWY-6435]], 4-hydroxybenzoate biosynthesis III (plants):
−
* Gene: [[E_subulatus_08002]]
+
** '''4''' reactions found over '''5''' reactions in the full pathway
−
** Category: [[annotation]]
+
* [[PWY-5135]], xanthohumol biosynthesis:
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6920]], 6-gingerol analog biosynthesis (engineered):
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 
</div>
 
</div>
−
== Pathway(s)  ==
 
−
* [[PWY-5987]], sorgoleone biosynthesis:
 
−
** '''1''' reactions found over '''8''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR116445
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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{{#set: common-name=palmitoyl-coa 9-desaturase}}
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* METANETX-RXN : MNXR94998
−
{{#set: ec-number=ec-1.14.19.1}}
+
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19642 19642]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01616 R01616]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P31684 P31684]
 +
** [http://www.uniprot.org/uniprot/P31685 P31685]
 +
** [http://www.uniprot.org/uniprot/Q9SWH8 Q9SWH8]
 +
** [http://www.uniprot.org/uniprot/Q9SWH7 Q9SWH7]
 +
** [http://www.uniprot.org/uniprot/P17814 P17814]
 +
** [http://www.uniprot.org/uniprot/P31687 P31687]
 +
** [http://www.uniprot.org/uniprot/Q8S5C2 Q8S5C2]
 +
** [http://www.uniprot.org/uniprot/P14912 P14912]
 +
** [http://www.uniprot.org/uniprot/P14913 P14913]
 +
** [http://www.uniprot.org/uniprot/P31686 P31686]
 +
** [http://www.uniprot.org/uniprot/Q42524 Q42524]
 +
** [http://www.uniprot.org/uniprot/Q42943 Q42943]
 +
** [http://www.uniprot.org/uniprot/Q42982 Q42982]
 +
** [http://www.uniprot.org/uniprot/P93360 P93360]
 +
** [http://www.uniprot.org/uniprot/P93361 P93361]
 +
** [http://www.uniprot.org/uniprot/O24146 O24146]
 +
** [http://www.uniprot.org/uniprot/O48868 O48868]
 +
** [http://www.uniprot.org/uniprot/O48869 O48869]
 +
** [http://www.uniprot.org/uniprot/O81139 O81139]
 +
** [http://www.uniprot.org/uniprot/O81140 O81140]
 +
** [http://www.uniprot.org/uniprot/P41636 P41636]
 +
</div>
 +
{{#set: ec-number=ec-6.2.1.12}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=8}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=13}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=ectocarpus_subulatus}}
+
{{#set: reconstruction source=output_pantograph_a.taliana.aragem}}

Latest revision as of 19:38, 17 March 2021

Reaction 4-COUMARATE--COA-LIGASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5048, rosmarinic acid biosynthesis I:
    • 2 reactions found over 10 reactions in the full pathway
  • PWY1F-FLAVSYN, flavonoid biosynthesis:
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7897, flavonoid di-C-glucosylation:
    • 3 reactions found over 15 reactions in the full pathway
  • PWY-8002, 4-coumarate degradation (aerobic):
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7046, 4-coumarate degradation (anaerobic):
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-6982, umbelliferone biosynthesis:
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-7398, coumarins biosynthesis (engineered):
    • 3 reactions found over 13 reactions in the full pathway
  • PWY-6320, phaselate biosynthesis:
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-361, phenylpropanoid biosynthesis:
    • 6 reactions found over 15 reactions in the full pathway
  • PWY-7397, naringenin biosynthesis (engineered):
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-6435, 4-hydroxybenzoate biosynthesis III (plants):
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-5135, xanthohumol biosynthesis:
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-6920, 6-gingerol analog biosynthesis (engineered):
    • 3 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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