Difference between revisions of "4.2.99.18-RXN"

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(Created page with "Category:reaction == Reaction PEPCARBOX-RXN == * common-name: ** phosphoenolpyruvate carboxylase * ec-number: ** [http://enzyme.expasy.org/EC/4.1.1.31 ec-4.1.1.31] * direc...")
(Created page with "Category:reaction == Reaction 4.2.99.18-RXN == * common-name: ** dna-ap site lyase * ec-number: ** [http://enzyme.expasy.org/EC/4.2.99.18 ec-4.2.99.18] * direction: ** lef...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PEPCARBOX-RXN ==
+
== Reaction 4.2.99.18-RXN ==
 
* common-name:
 
* common-name:
−
** phosphoenolpyruvate carboxylase
+
** dna-ap site lyase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.1.31 ec-4.1.1.31]
+
** [http://enzyme.expasy.org/EC/4.2.99.18 ec-4.2.99.18]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[HCO3]][c] '''+''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''=>''' 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[DNA-containing-abasic-Sites]][c] '''=>''' 1 [[3-terminal-unsaturated-sugars]][c] '''+''' 1 [[5-Phospho-terminated-DNAs]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_24628]]
+
* Gene: [[E_subulatus_21317]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_21314]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_21312]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_21313]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_21315]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_21316]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* [[PWY-7124]], ethene biosynthesis V (engineered):
 
−
** '''8''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6549]], L-glutamine biosynthesis III:
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum):
 
−
** '''9''' reactions found over '''13''' reactions in the full pathway
 
−
* [[FERMENTATION-PWY]], mixed acid fermentation:
 
−
** '''10''' reactions found over '''16''' reactions in the full pathway
 
−
* [[PWYQT-4429]], CO2 fixation into oxaloacetate (anaplerotic):
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-1622]], formaldehyde assimilation I (serine pathway):
 
−
** '''6''' reactions found over '''13''' reactions in the full pathway
 
−
* [[P23-PWY]], reductive TCA cycle I:
 
−
** '''9''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type:
 
−
** '''9''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type:
 
−
** '''9''' reactions found over '''14''' reactions in the full pathway
 
−
* [[PWY-241]], C4 photosynthetic carbon assimilation cycle, NADP-ME type:
 
−
** '''4''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
 
−
** '''10''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6146]], Methanobacterium thermoautotrophicum biosynthetic metabolism:
 
−
** '''8''' reactions found over '''2''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR115619
−
* METANETX-RXN : MNXR116110
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00345 R00345]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P28594 P28594]
+
** [http://www.uniprot.org/uniprot/P0AB83 P0AB83]
−
** [http://www.uniprot.org/uniprot/P43920 P43920]
+
** [http://www.uniprot.org/uniprot/P28352 P28352]
−
** [http://www.uniprot.org/uniprot/P29195 P29195]
+
** [http://www.uniprot.org/uniprot/Q58829 Q58829]
−
** [http://www.uniprot.org/uniprot/P51059 P51059]
+
** [http://www.uniprot.org/uniprot/Q9PHS1 Q9PHS1]
−
** [http://www.uniprot.org/uniprot/P00864 P00864]
+
** [http://www.uniprot.org/uniprot/Q9JVT0 Q9JVT0]
−
** [http://www.uniprot.org/uniprot/P12880 P12880]
+
** [http://www.uniprot.org/uniprot/Q9PNL1 Q9PNL1]
−
** [http://www.uniprot.org/uniprot/P10490 P10490]
+
** [http://www.uniprot.org/uniprot/P44319 P44319]
−
** [http://www.uniprot.org/uniprot/P16097 P16097]
+
** [http://www.uniprot.org/uniprot/Q9CGM5 Q9CGM5]
−
** [http://www.uniprot.org/uniprot/P27154 P27154]
+
** [http://www.uniprot.org/uniprot/P04418 P04418]
−
** [http://www.uniprot.org/uniprot/P06516 P06516]
+
** [http://www.uniprot.org/uniprot/P27695 P27695]
−
** [http://www.uniprot.org/uniprot/Q43267 Q43267]
+
** [http://www.uniprot.org/uniprot/P23196 P23196]
−
** [http://www.uniprot.org/uniprot/Q41197 Q41197]
+
** [http://www.uniprot.org/uniprot/P22936 P22936]
−
** [http://www.uniprot.org/uniprot/P29194 P29194]
+
** [http://www.uniprot.org/uniprot/P43138 P43138]
−
** [http://www.uniprot.org/uniprot/P30694 P30694]
+
** [http://www.uniprot.org/uniprot/P95945 P95945]
−
** [http://www.uniprot.org/uniprot/P15804 P15804]
+
** [http://www.uniprot.org/uniprot/P50525 P50525]
−
** [http://www.uniprot.org/uniprot/Q43268 Q43268]
+
{{#set: common-name=dna-ap site lyase}}
−
** [http://www.uniprot.org/uniprot/Q01647 Q01647]
+
{{#set: ec-number=ec-4.2.99.18}}
−
** [http://www.uniprot.org/uniprot/Q01648 Q01648]
 
−
** [http://www.uniprot.org/uniprot/Q02735 Q02735]
 
−
** [http://www.uniprot.org/uniprot/Q02909 Q02909]
 
−
** [http://www.uniprot.org/uniprot/Q42730 Q42730]
 
−
** [http://www.uniprot.org/uniprot/Q41198 Q41198]
 
−
** [http://www.uniprot.org/uniprot/P51063 P51063]
 
−
** [http://www.uniprot.org/uniprot/Q40103 Q40103]
 
−
** [http://www.uniprot.org/uniprot/Q40104 Q40104]
 
−
** [http://www.uniprot.org/uniprot/Q40105 Q40105]
 
−
** [http://www.uniprot.org/uniprot/Q40102 Q40102]
 
−
** [http://www.uniprot.org/uniprot/Q41836 Q41836]
 
−
** [http://www.uniprot.org/uniprot/O22118 O22118]
 
−
** [http://www.uniprot.org/uniprot/O22119 O22119]
 
−
** [http://www.uniprot.org/uniprot/O48623 O48623]
 
−
** [http://www.uniprot.org/uniprot/Q42634 Q42634]
 
−
** [http://www.uniprot.org/uniprot/O23946 O23946]
 
−
** [http://www.uniprot.org/uniprot/O23947 O23947]
 
−
** [http://www.uniprot.org/uniprot/Q84VW9 Q84VW9]
 
−
</div>
 
−
{{#set: common-name=phosphoenolpyruvate carboxylase}}
 
−
{{#set: ec-number=ec-4.1.1.31}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=6}}
−
{{#set: nb pathway associated=12}}
+
{{#set: nb pathway associated=0}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}

Latest revision as of 19:40, 17 March 2021

Reaction 4.2.99.18-RXN

  • common-name:
    • dna-ap site lyase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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