Difference between revisions of "ACONITATEDEHYDR-RXN"

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(Created page with "Category:reaction == Reaction PROTEIN-TYROSINE-PHOSPHATASE-RXN == * common-name: ** protein-tyrosine phosphatase ** protein tyrosine phosphatase * ec-number: ** [http://en...")
 
(Created page with "Category:reaction == Reaction ACONITATEDEHYDR-RXN == * common-name: ** citrate hydro-lyase (cis-aconitate-forming) * direction: ** reversible == Reaction formula == * 1 ...")
 
(3 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PROTEIN-TYROSINE-PHOSPHATASE-RXN ==
+
== Reaction ACONITATEDEHYDR-RXN ==
 
* common-name:
 
* common-name:
−
** protein-tyrosine phosphatase
+
** citrate hydro-lyase (cis-aconitate-forming)
−
** protein tyrosine phosphatase
 
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/3.1.3.48 ec-3.1.3.48]
 
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Protein-tyrosine-phosphates]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[Protein-Tyrosines]][c]
+
* 1 [[CIT]][c] '''<=>''' 1 [[CIS-ACONITATE]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[E_subulatus_20171]]
−
* Gene: [[E_subulatus_09095]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_21808]]
+
== Pathway(s)  ==
−
** Category: [[annotation]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
* [[TCA]], TCA cycle I (prokaryotic):
−
* Gene: [[E_subulatus_15399]]
+
** '''8''' reactions found over '''10''' reactions in the full pathway
−
** Category: [[annotation]]
+
* [[PWY-7254]], TCA cycle VII (acetate-producers):
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
** '''6''' reactions found over '''9''' reactions in the full pathway
−
* Gene: [[E_subulatus_22047]]
+
* [[PWY-5690]], TCA cycle II (plants and fungi):
−
** Category: [[annotation]]
+
** '''7''' reactions found over '''9''' reactions in the full pathway
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
* [[PWY-7124]], ethene biosynthesis V (engineered):
−
* Gene: [[E_subulatus_21809]]
+
** '''8''' reactions found over '''8''' reactions in the full pathway
−
** Category: [[annotation]]
+
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle:
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
** '''6''' reactions found over '''6''' reactions in the full pathway
−
* Gene: [[E_subulatus_23947]]
+
* [[FERMENTATION-PWY]], mixed acid fermentation:
−
** Category: [[annotation]]
+
** '''10''' reactions found over '''16''' reactions in the full pathway
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
* [[PWY-6549]], L-glutamine biosynthesis III:
−
* Gene: [[E_subulatus_01178]]
+
** '''8''' reactions found over '''9''' reactions in the full pathway
−
** Category: [[annotation]]
+
* [[PWY-6728]], methylaspartate cycle:
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
** '''12''' reactions found over '''19''' reactions in the full pathway
−
* Gene: [[E_subulatus_16551]]
+
* [[PWY-5392]], reductive TCA cycle II:
−
** Category: [[annotation]]
+
** '''5''' reactions found over '''12''' reactions in the full pathway
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
* [[P23-PWY]], reductive TCA cycle I:
−
* Gene: [[E_subulatus_14526]]
+
** '''9''' reactions found over '''12''' reactions in the full pathway
−
** Category: [[annotation]]
+
* [[PWY66-398]], TCA cycle III (animals):
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
** '''10''' reactions found over '''10''' reactions in the full pathway
−
* Gene: [[E_subulatus_01058]]
+
* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
−
** Category: [[annotation]]
+
** '''10''' reactions found over '''8''' reactions in the full pathway
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
* [[REDCITCYC]], TCA cycle VI (Helicobacter):
−
* Gene: [[E_subulatus_09092]]
+
** '''5''' reactions found over '''9''' reactions in the full pathway
−
** Category: [[annotation]]
+
* [[PWY-6969]], TCA cycle V (2-oxoglutarate synthase):
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
** '''10''' reactions found over '''9''' reactions in the full pathway
−
* Gene: [[E_subulatus_22331]]
+
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase):
−
** Category: [[annotation]]
+
** '''10''' reactions found over '''9''' reactions in the full pathway
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_02195]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_15371]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_24826]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_24825]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_01057]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_04737]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_09094]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_02194]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_10800]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_09093]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_01055]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_15739]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_23057]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_23946]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_24394]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_15738]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_15398]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_04529]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_23362]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_22048]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_01179]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_15397]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_02420]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_01056]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_24228]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_09096]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_23948]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_01054]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_00732]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
</div>
 
</div>
−
== Pathway(s)  ==
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* DB : UNIPROT
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* ID : Q91054
+
* METANETX-RXN : MNXR95386
−
{{#set: common-name=protein-tyrosine phosphatase|protein tyrosine phosphatase}}
+
* RHEA:
−
{{#set: ec-number=ec-3.1.3.48}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10231 10231]
−
{{#set: direction=left-to-right}}
+
* PIR:
−
{{#set: nb gene associated=41}}
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A35544 A35544]
−
{{#set: nb pathway associated=0}}
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44153 A44153]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44154 A44154]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A47184 A47184]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81801 A81801]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B48642 B48642]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64362 C64362]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64617 C64617]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C81356 C81356]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F64734 F64734]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F70873 F70873]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G64875 G64875]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69599 G69599]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G86708 G86708]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81775 H81775]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17526 S17526]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S18720 S18720]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26403 S26403]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S49849 S49849]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S50387 S50387]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57528 S57528]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57805 S57805]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S76777 S76777]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04693 T04693]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04820 T04820]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07611 T07611]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T10101 T10101]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52543 T52543]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P16276 P16276]
 +
** [http://www.uniprot.org/uniprot/Q01059 Q01059]
 +
** [http://www.uniprot.org/uniprot/Q9TSA1 Q9TSA1]
 +
** [http://www.uniprot.org/uniprot/Q9JTI5 Q9JTI5]
 +
** [http://www.uniprot.org/uniprot/P37032 P37032]
 +
** [http://www.uniprot.org/uniprot/P81291 P81291]
 +
** [http://www.uniprot.org/uniprot/Q9PP88 Q9PP88]
 +
** [http://www.uniprot.org/uniprot/P36683 P36683]
 +
** [http://www.uniprot.org/uniprot/O53166 O53166]
 +
** [http://www.uniprot.org/uniprot/P25516 P25516]
 +
** [http://www.uniprot.org/uniprot/P09339 P09339]
 +
** [http://www.uniprot.org/uniprot/Q9CHQ5 Q9CHQ5]
 +
** [http://www.uniprot.org/uniprot/Q9JT05 Q9JT05]
 +
** [http://www.uniprot.org/uniprot/Q99798 Q99798]
 +
** [http://www.uniprot.org/uniprot/P28271 P28271]
 +
** [http://www.uniprot.org/uniprot/P21399 P21399]
 +
** [http://www.uniprot.org/uniprot/Q42669 Q42669]
 +
** [http://www.uniprot.org/uniprot/P19414 P19414]
 +
** [http://www.uniprot.org/uniprot/P20004 P20004]
 +
** [http://www.uniprot.org/uniprot/P49609 P49609]
 +
** [http://www.uniprot.org/uniprot/P74582 P74582]
 +
** [http://www.uniprot.org/uniprot/Q42560 Q42560]
 +
** [http://www.uniprot.org/uniprot/Q9SZ36 Q9SZ36]
 +
** [http://www.uniprot.org/uniprot/O04916 O04916]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01325 R01325]
 +
</div>
 +
{{#set: common-name=citrate hydro-lyase (cis-aconitate-forming)}}
 +
{{#set: direction=reversible}}
 +
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=15}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}

Latest revision as of 19:41, 17 March 2021

Reaction ACONITATEDEHYDR-RXN

  • common-name:
    • citrate hydro-lyase (cis-aconitate-forming)
  • direction:
    • reversible

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • TCA, TCA cycle I (prokaryotic):
    • 8 reactions found over 10 reactions in the full pathway
  • PWY-7254, TCA cycle VII (acetate-producers):
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-5690, TCA cycle II (plants and fungi):
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-7124, ethene biosynthesis V (engineered):
    • 8 reactions found over 8 reactions in the full pathway
  • GLYOXYLATE-BYPASS, glyoxylate cycle:
    • 6 reactions found over 6 reactions in the full pathway
  • FERMENTATION-PWY, mixed acid fermentation:
    • 10 reactions found over 16 reactions in the full pathway
  • PWY-6549, L-glutamine biosynthesis III:
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-6728, methylaspartate cycle:
    • 12 reactions found over 19 reactions in the full pathway
  • PWY-5392, reductive TCA cycle II:
    • 5 reactions found over 12 reactions in the full pathway
  • P23-PWY, reductive TCA cycle I:
    • 9 reactions found over 12 reactions in the full pathway
  • PWY66-398, TCA cycle III (animals):
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-5913, partial TCA cycle (obligate autotrophs):
    • 10 reactions found over 8 reactions in the full pathway
  • REDCITCYC, TCA cycle VI (Helicobacter):
    • 5 reactions found over 9 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate synthase):
    • 10 reactions found over 9 reactions in the full pathway
  • P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase):
    • 10 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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