Difference between revisions of "DUTP-PYROP-RXN"

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(Created page with "Category:reaction == Reaction ACETATE--COA-LIGASE-RXN == * common-name: ** acetyl-coa synthetase (amp-forming) * ec-number: ** [http://enzyme.expasy.org/EC/6.2.1.1 ec-6.2....")
(Created page with "Category:reaction == Reaction DUTP-PYROP-RXN == * common-name: ** deoxyuridine triphosphatase * ec-number: ** [http://enzyme.expasy.org/EC/3.6.1.23 ec-3.6.1.23] ** [http:/...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ACETATE--COA-LIGASE-RXN ==
+
== Reaction DUTP-PYROP-RXN ==
 
* common-name:
 
* common-name:
−
** acetyl-coa synthetase (amp-forming)
+
** deoxyuridine triphosphatase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.2.1.1 ec-6.2.1.1]
+
** [http://enzyme.expasy.org/EC/3.6.1.23 ec-3.6.1.23]
 +
** [http://enzyme.expasy.org/EC/3.6.1.9 ec-3.6.1.9]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ACET]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[DUTP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[DUMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_10760]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[E_subulatus_16057]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_10507]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[E_subulatus_01318]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_16054]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_19997]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_16055]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_16985]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_10759]]
+
* Gene: [[E_subulatus_02580]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_19998]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_16056]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_19996]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6672]], cis-geranyl-CoA degradation:
+
* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II:
−
** '''4''' reactions found over '''9''' reactions in the full pathway
+
** '''4''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-7118]], chitin deacetylation:
+
* [[PWY-7206]], pyrimidine deoxyribonucleotides dephosphorylation:
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY0-1313]], acetate conversion to acetyl-CoA:
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY66-21]], ethanol degradation II:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY66-161]], ethanol degradation III:
 
 
** '''2''' reactions found over '''3''' reactions in the full pathway
 
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY66-162]], ethanol degradation IV:
+
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III:
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I:
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
 +
** '''12''' reactions found over '''13''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* METANETX-RXN : MNXR95413
+
* METANETX-RXN : MNXR97822
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23176 23176]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10249 10249]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00235 R00235]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02100 R02100]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P27095 P27095]
+
** [http://www.uniprot.org/uniprot/Q89932 Q89932]
−
** [http://www.uniprot.org/uniprot/P31638 P31638]
+
** [http://www.uniprot.org/uniprot/P33316 P33316]
−
** [http://www.uniprot.org/uniprot/Q12662 Q12662]
+
** [http://www.uniprot.org/uniprot/O15923 O15923]
−
** [http://www.uniprot.org/uniprot/P28812 P28812]
+
** [http://www.uniprot.org/uniprot/Q9PMK9 Q9PMK9]
−
** [http://www.uniprot.org/uniprot/P27550 P27550]
+
** [http://www.uniprot.org/uniprot/Q9Z9C2 Q9Z9C2]
−
** [http://www.uniprot.org/uniprot/O34613 O34613]
+
** [http://www.uniprot.org/uniprot/Q9JUW1 Q9JUW1]
−
** [http://www.uniprot.org/uniprot/Q9PMD2 Q9PMD2]
+
** [http://www.uniprot.org/uniprot/P43792 P43792]
−
** [http://www.uniprot.org/uniprot/P36333 P36333]
+
** [http://www.uniprot.org/uniprot/P32518 P32518]
−
** [http://www.uniprot.org/uniprot/Q01574 Q01574]
+
** [http://www.uniprot.org/uniprot/P68635 P68635]
−
** [http://www.uniprot.org/uniprot/P39062 P39062]
+
** [http://www.uniprot.org/uniprot/P68634 P68634]
−
** [http://www.uniprot.org/uniprot/Q01576 Q01576]
+
** [http://www.uniprot.org/uniprot/Q76RE7 Q76RE7]
−
** [http://www.uniprot.org/uniprot/P52910 P52910]
+
** [http://www.uniprot.org/uniprot/P03195 P03195]
−
** [http://www.uniprot.org/uniprot/Q55404 Q55404]
+
** [http://www.uniprot.org/uniprot/Q89662 Q89662]
−
** [http://www.uniprot.org/uniprot/P16928 P16928]
+
** [http://www.uniprot.org/uniprot/Q00030 Q00030]
−
** [http://www.uniprot.org/uniprot/P16929 P16929]
+
** [http://www.uniprot.org/uniprot/P33317 P33317]
−
** [http://www.uniprot.org/uniprot/O68040 O68040]
+
** [http://www.uniprot.org/uniprot/Q45920 Q45920]
−
** [http://www.uniprot.org/uniprot/P78773 P78773]
+
** [http://www.uniprot.org/uniprot/P43058 P43058]
 +
** [http://www.uniprot.org/uniprot/O80091 O80091]
 +
** [http://www.uniprot.org/uniprot/O36404 O36404]
 +
** [http://www.uniprot.org/uniprot/O41033 O41033]
 +
** [http://www.uniprot.org/uniprot/Q9YML1 Q9YML1]
 +
** [http://www.uniprot.org/uniprot/O39251 O39251]
 +
** [http://www.uniprot.org/uniprot/O01934 O01934]
 +
** [http://www.uniprot.org/uniprot/P10234 P10234]
 +
** [http://www.uniprot.org/uniprot/P06968 P06968]
 +
** [http://www.uniprot.org/uniprot/P09254 P09254]
 +
** [http://www.uniprot.org/uniprot/P28892 P28892]
 +
** [http://www.uniprot.org/uniprot/P28893 P28893]
 
</div>
 
</div>
−
{{#set: common-name=acetyl-coa synthetase (amp-forming)}}
+
{{#set: common-name=deoxyuridine triphosphatase}}
−
{{#set: ec-number=ec-6.2.1.1}}
+
{{#set: ec-number=ec-3.6.1.9|ec-3.6.1.23}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=11}}
−
{{#set: nb pathway associated=6}}
+
{{#set: nb pathway associated=5}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=ectocarpus_subulatus}}
+
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}

Latest revision as of 19:41, 17 March 2021

Reaction DUTP-PYROP-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7187, pyrimidine deoxyribonucleotides de novo biosynthesis II:
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-7206, pyrimidine deoxyribonucleotides dephosphorylation:
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-6545, pyrimidine deoxyribonucleotides de novo biosynthesis III:
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-7184, pyrimidine deoxyribonucleotides de novo biosynthesis I:
    • 9 reactions found over 9 reactions in the full pathway
  • PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
    • 12 reactions found over 13 reactions in the full pathway

Reconstruction information

External links





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