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| | [[Category:reaction]] | | [[Category:reaction]] |
| − | == Reaction DUDPKIN-RXN == | + | == Reaction ExchangeSeed-NAD == |
| − | * common-name:
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| − | ** dudp kinase
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| − | ** nucleoside diphosphate kinase
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| − | * ec-number:
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| − | ** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6]
| |
| | * direction: | | * direction: |
| − | ** left-to-right | + | ** reversible |
| | == Reaction formula == | | == Reaction formula == |
| − | * 1 [[ATP]][c] '''+''' 1 [[DUDP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[DUTP]][c] | + | * 1.0 [[NAD]][C-BOUNDARY] '''<=>''' 1.0 [[NAD]][e] |
| | == Gene(s) associated with this reaction == | | == Gene(s) associated with this reaction == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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| − | * Gene: [[E_subulatus_17018]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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| − | * Gene: [[E_subulatus_17017]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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| − | * Gene: [[E_subulatus_23205]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | ** Category: [[orthology]]
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| − | *** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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| − | * Gene: [[E_subulatus_19894]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | * Gene: [[E_subulatus_11362]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | * Gene: [[E_subulatus_03750]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | ** Category: [[orthology]]
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| − | *** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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| − | * Gene: [[E_subulatus_13578]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | * Gene: [[E_subulatus_17015]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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| − | * Gene: [[E_subulatus_03562]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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| − | * Gene: [[E_subulatus_13580]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | * Gene: [[E_subulatus_03751]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | * Gene: [[E_subulatus_19892]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | * Gene: [[E_subulatus_03563]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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| − | * Gene: [[E_subulatus_19893]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | * Gene: [[E_subulatus_03752]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | * Gene: [[E_subulatus_11039]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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| − | * Gene: [[E_subulatus_11037]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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| − | * Gene: [[E_subulatus_11363]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | * Gene: [[E_subulatus_11361]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | ** Category: [[orthology]]
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| − | *** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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| − | * Gene: [[E_subulatus_11038]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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| − | * Gene: [[E_subulatus_13577]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | * Gene: [[E_subulatus_15295]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | * Gene: [[E_subulatus_24493]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | * Gene: [[E_subulatus_03631]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | * Gene: [[E_subulatus_17016]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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| − | * Gene: [[E_subulatus_13579]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | * Gene: [[E_subulatus_25805]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | </div>
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| | == Pathway(s) == | | == Pathway(s) == |
| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | ** '''12''' reactions found over '''13''' reactions in the full pathway
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| − | ** '''12''' reactions found over '''13''' reactions in the full pathway
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| − | ** '''8''' reactions found over '''9''' reactions in the full pathway
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| − | ** '''8''' reactions found over '''9''' reactions in the full pathway
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| − | ** '''9''' reactions found over '''9''' reactions in the full pathway
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| | == Reconstruction information == | | == Reconstruction information == |
| − | * category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a | + | * category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment |
| − | * category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
| |
| | == External links == | | == External links == |
| − | * DB : LIGAND-RXN
| + | {{#set: direction=reversible}} |
| − | * ID : R02331
| + | {{#set: nb gene associated=0}} |
| − | {{#set: common-name=dudp kinase|nucleoside diphosphate kinase}}
| + | {{#set: nb pathway associated=0}} |
| − | {{#set: ec-number=ec-2.7.4.6}}
| + | {{#set: reconstruction category=manual}} |
| − | {{#set: direction=left-to-right}} | + | {{#set: reconstruction tool=curation}} |
| − | {{#set: nb gene associated=27}} | + | {{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}} |
| − | {{#set: nb pathway associated=3}} | + | {{#set: reconstruction source=import_from_medium}} |
| − | {{#set: reconstruction category=annotation|orthology}} | |
| − | {{#set: reconstruction tool=pathwaytools|pantograph}} | |
| − | {{#set: reconstruction comment=n.a}} | |
| − | {{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}} | |
