Difference between revisions of "METHIONINE--TRNA-LIGASE-RXN"

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(Created page with "Category:reaction == Reaction GLYC3PDEHYDROGBIOSYN-RXN == * common-name: ** glycerol-3-phosphate dehydrogenase ** glycerol-3-phosphate dehydrogenase [nad+] * ec-number: **...")
(Created page with "Category:reaction == Reaction METHIONINE--TRNA-LIGASE-RXN == * common-name: ** methionine-trna ligase * ec-number: ** [http://enzyme.expasy.org/EC/6.1.1.10 ec-6.1.1.10] *...")
 
(One intermediate revision by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GLYC3PDEHYDROGBIOSYN-RXN ==
+
== Reaction METHIONINE--TRNA-LIGASE-RXN ==
 
* common-name:
 
* common-name:
−
** glycerol-3-phosphate dehydrogenase
+
** methionine-trna ligase
−
** glycerol-3-phosphate dehydrogenase [nad+]
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.94 ec-1.1.1.94]
+
** [http://enzyme.expasy.org/EC/6.1.1.10 ec-6.1.1.10]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DIHYDROXY-ACETONE-PHOSPHATE]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[GLYCEROL-3P]][c] '''+''' 1 [[NAD-P-OR-NOP]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[Elongation-tRNAMet]][c] '''+''' 1 [[MET]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-MET-tRNAs]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[E_subulatus_19994]]
+
* Gene: [[E_subulatus_21925]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_07294]]
+
* Gene: [[E_subulatus_21926]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_04109]]
+
* Gene: [[E_subulatus_23079]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_04110]]
+
* Gene: [[E_subulatus_23077]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_06479]]
+
* Gene: [[E_subulatus_21928]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_04111]]
+
* Gene: [[E_subulatus_23078]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_07295]]
+
* Gene: [[E_subulatus_21927]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_06481]]
+
* Gene: [[E_subulatus_23075]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_06478]]
+
* Gene: [[E_subulatus_23076]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_06480]]
+
* Gene: [[E_subulatus_16674]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_11786]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_11787]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5981]], CDP-diacylglycerol biosynthesis III:
+
* [[TRNA-CHARGING-PWY]], tRNA charging:
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
−
* [[PWY0-1319]], CDP-diacylglycerol biosynthesis II:
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5667]], CDP-diacylglycerol biosynthesis I:
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7902]], glucosylglycerol biosynthesis:
 
−
** '''3''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR115935
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR116054
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11094 11094]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13482 13482]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00844 R00844]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03659 R03659]
−
{{#set: common-name=glycerol-3-phosphate dehydrogenase [nad+]|glycerol-3-phosphate dehydrogenase}}
+
* UNIPROT:
−
{{#set: ec-number=ec-1.1.1.94}}
+
** [http://www.uniprot.org/uniprot/P56127 P56127]
 +
** [http://www.uniprot.org/uniprot/Q44951 Q44951]
 +
** [http://www.uniprot.org/uniprot/P47267 P47267]
 +
** [http://www.uniprot.org/uniprot/O84035 O84035]
 +
** [http://www.uniprot.org/uniprot/O28819 O28819]
 +
** [http://www.uniprot.org/uniprot/O58721 O58721]
 +
** [http://www.uniprot.org/uniprot/O83776 O83776]
 +
** [http://www.uniprot.org/uniprot/O33925 O33925]
 +
** [http://www.uniprot.org/uniprot/Q58659 Q58659]
 +
** [http://www.uniprot.org/uniprot/O66738 O66738]
 +
** [http://www.uniprot.org/uniprot/Q9ZCP0 Q9ZCP0]
 +
** [http://www.uniprot.org/uniprot/Q9PP85 Q9PP85]
 +
** [http://www.uniprot.org/uniprot/O26687 O26687]
 +
** [http://www.uniprot.org/uniprot/O67298 O67298]
 +
** [http://www.uniprot.org/uniprot/Q9JWP0 Q9JWP0]
 +
** [http://www.uniprot.org/uniprot/Q9ZKG9 Q9ZKG9]
 +
** [http://www.uniprot.org/uniprot/Q9Z959 Q9Z959]
 +
** [http://www.uniprot.org/uniprot/Q9CHE0 Q9CHE0]
 +
** [http://www.uniprot.org/uniprot/P43828 P43828]
 +
** [http://www.uniprot.org/uniprot/P56192 P56192]
 +
** [http://www.uniprot.org/uniprot/Q50319 Q50319]
 +
** [http://www.uniprot.org/uniprot/P23920 P23920]
 +
** [http://www.uniprot.org/uniprot/P75091 P75091]
 +
** [http://www.uniprot.org/uniprot/Q55729 Q55729]
 +
** [http://www.uniprot.org/uniprot/P22438 P22438]
 +
** [http://www.uniprot.org/uniprot/P00958 P00958]
 +
** [http://www.uniprot.org/uniprot/P00959 P00959]
 +
** [http://www.uniprot.org/uniprot/Q9M2T9 Q9M2T9]
 +
** [http://www.uniprot.org/uniprot/O23761 O23761]
 +
</div>
 +
{{#set: common-name=methionine-trna ligase}}
 +
{{#set: ec-number=ec-6.1.1.10}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=12}}
+
{{#set: nb gene associated=10}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}

Latest revision as of 19:40, 17 March 2021

Reaction METHIONINE--TRNA-LIGASE-RXN

  • common-name:
    • methionine-trna ligase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • TRNA-CHARGING-PWY, tRNA charging:
    • 21 reactions found over 21 reactions in the full pathway

Reconstruction information

External links





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