Difference between revisions of "PWY-6442"

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(Created page with "Category:pathway == Pathway PWY-5697 == * common-name: ** allantoin degradation to ureidoglycolate i (urea producing) * taxonomic-range: ** tax-2759 ** tax-2 == Reaction(s...")
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==  description ==
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[[Category:pathway]]
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== Automatic reconstruction with [http://aureme.genouest.org AuReMe] ==
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== Pathway PWY-5697 ==
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Model summary: [[MEDIA:summary.txt|summary]]
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* common-name:
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** allantoin degradation to ureidoglycolate i (urea producing)
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Download '''AuReMe''' Input/Output [LINK OR MEDIA data]
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* taxonomic-range:
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** tax-2759
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The automatic reconstruction of ''Ectocarpus subulatus strain BFT'' results to a Genome scale [[MEDIA:model.xml|Model]] containing 2086 reactions, 2204 metabolites, 5052 genes and 1152 pathways. This GeM was obtained based on the following sources:
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** tax-2
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* Based on annotation data:
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== Reaction(s) found ==
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** Creation of a metabolic network containing 1459 reactions
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* [[ALLANTOICASE-RXN]]
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* Based on expertise:
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* [[ALLANTOINASE-RXN]]
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** 480 reaction(s) added
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== Reaction(s) not found ==
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* Based on orthology data:
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All reactions of this pathways are in present
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** Creation of a global metabolic network containing 417 reactions
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{{#set: common-name=allantoin degradation to ureidoglycolate i (urea producing)}}
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*** From template ''a.taliana.aragem'' creation of a metabolic network containing: 417 reactions
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{{#set: taxonomic-range=tax-2759|tax-2}}
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{{#set: nb reaction found=2}}
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*List of tools used:
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{{#set: completion rate=1.0}}
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** Tool: [http://bioinformatics.ai.sri.com/ptools/ PathwayTools]
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{{#set: nb total reaction=2}}
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** Tool: [http://pathtastic.gforge.inria.fr Pantograph]
 
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[[FILE:venn.png|frameless|border]]
 
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== Collaborative curation ==  
 
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* Suggest reactions to add or remove:
 
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** Download this [[MEDIA:Add_delete_reaction.csv|form]]
 
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* Suggest new reactions to create and add:
 
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** Download this [[MEDIA:Reaction_creator.csv|form]]
 
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* '''Follow the examples given in the form(s) to correctly share your suggestions'''
 
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* Send the filled form(s) to: gem-aureme[AT]inria.fr
 

Revision as of 17:24, 13 January 2021

Pathway PWY-5697

  • common-name:
    • allantoin degradation to ureidoglycolate i (urea producing)
  • taxonomic-range:
    • tax-2759
    • tax-2

Reaction(s) found

Reaction(s) not found

All reactions of this pathways are in present



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