Difference between revisions of "PWY-6442"

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(Created page with "Category:pathway == Pathway PWY-6442 == * common-name: ** spermidine hydroxycinnamic acid conjugates biosynthesis * taxonomic-range: ** tax-33090 == Reaction(s) found == *...")
 
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==  description ==
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[[Category:pathway]]
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== Automatic reconstruction with [http://aureme.genouest.org AuReMe] ==
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== Pathway PWY-6442 ==
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Model summary: [[MEDIA:summary.txt|summary]]
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* common-name:
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** spermidine hydroxycinnamic acid conjugates biosynthesis
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Download '''AuReMe''' Input/Output [LINK OR MEDIA data]
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* taxonomic-range:
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** tax-33090
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The automatic reconstruction of ''Ectocarpus subulatus strain BFT'' results to a Genome scale [[MEDIA:model.xml|Model]] containing 2086 reactions, 2204 metabolites, 5052 genes and 1152 pathways. This GeM was obtained based on the following sources:
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== Reaction(s) found ==
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* Based on annotation data:
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* [[RXN-11263]]
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** Creation of a metabolic network containing 1459 reactions
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== Reaction(s) not found ==
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* Based on expertise:
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* [NoneRXN-11262 RXN-11262]
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** 480 reaction(s) added
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* [NoneRXN-11257 RXN-11257]
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* Based on orthology data:
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* [NoneRXN-11261 RXN-11261]
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** Creation of a global metabolic network containing 417 reactions
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* [NoneRXN-11259 RXN-11259]
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*** From template ''a.taliana.aragem'' creation of a metabolic network containing: 417 reactions
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* [NoneRXN-11260 RXN-11260]
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* [NoneRXN-11258 RXN-11258]
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*List of tools used:
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{{#set: common-name=spermidine hydroxycinnamic acid conjugates biosynthesis}}
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** Tool: [http://bioinformatics.ai.sri.com/ptools/ PathwayTools]
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{{#set: taxonomic-range=tax-33090}}
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{{#set: nb reaction found=1}}
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** Tool: [http://pathtastic.gforge.inria.fr Pantograph]
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{{#set: completion rate=0.14}}
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[[FILE:venn.png|frameless|border]]
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{{#set: nb total reaction=7}}
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== Collaborative curation ==  
 
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* Suggest reactions to add or remove:
 
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** Download this [[MEDIA:Add_delete_reaction.csv|form]]
 
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* Suggest new reactions to create and add:
 
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** Download this [[MEDIA:Reaction_creator.csv|form]]
 
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* '''Follow the examples given in the form(s) to correctly share your suggestions'''
 
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* Send the filled form(s) to: gem-aureme[AT]inria.fr
 

Latest revision as of 19:19, 17 March 2021

Pathway PWY-6442

  • common-name:
    • spermidine hydroxycinnamic acid conjugates biosynthesis
  • taxonomic-range:
    • tax-33090

Reaction(s) found

Reaction(s) not found

  • [NoneRXN-11262 RXN-11262]
  • [NoneRXN-11257 RXN-11257]
  • [NoneRXN-11261 RXN-11261]
  • [NoneRXN-11259 RXN-11259]
  • [NoneRXN-11260 RXN-11260]
  • [NoneRXN-11258 RXN-11258]



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