Difference between revisions of "Pathwaytools"

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(Created page with "Category:reaction == Reaction RXN66-472 == * common-name: ** fatty aldehyde dehydrogenase ** 2-methyl branched fatty aldehyde dehydrogenase * ec-number: ** [http://enzyme....")
(Created page with "Category:reaction == Reaction ExchangeSeed-FE+3 == * direction: ** reversible == Reaction formula == * 1.0 FE+3[C-BOUNDARY] '''<=>''' 1.0 FE+3[e] == Gene(s) associ...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN66-472 ==
+
== Reaction ExchangeSeed-FE+3 ==
* common-name:
 
** fatty aldehyde dehydrogenase
 
** 2-methyl branched fatty aldehyde dehydrogenase
 
* ec-number:
 
** [http://enzyme.expasy.org/EC/1.2.1.3 ec-1.2.1.3]
 
 
* direction:
 
* direction:
** left-to-right
+
** reversible
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[2-Me-Branched-234-Sat-FALD]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[2-Me-Branched-234-Sat-FA]][c] '''+''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c]
+
* 1.0 [[FE+3]][C-BOUNDARY] '''<=>''' 1.0 [[FE+3]][e]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* Gene: [[E_subulatus_20914]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_00191]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_20913]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_14940]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_20912]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_25404]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_03415]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_23526]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_14941]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_02234]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_18015]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_03414]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_00192]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY66-387]], 3-methyl-branched fatty acid &alpha;-oxidation:
 
** '''3''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment
 
== External links  ==
 
== External links  ==
* METANETX-RXN : MNXR123743
+
{{#set: direction=reversible}}
{{#set: common-name=2-methyl branched fatty aldehyde dehydrogenase|fatty aldehyde dehydrogenase}}
+
{{#set: nb gene associated=0}}
{{#set: ec-number=ec-1.2.1.3}}
+
{{#set: nb pathway associated=0}}
{{#set: direction=left-to-right}}
+
{{#set: reconstruction category=manual}}
{{#set: nb gene associated=13}}
+
{{#set: reconstruction tool=curation}}
{{#set: nb pathway associated=1}}
+
{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction source=import_from_medium}}
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}
 

Revision as of 19:04, 17 March 2021

Reaction ExchangeSeed-FE+3

  • direction:
    • reversible

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links