Difference between revisions of "R621-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction TRYPTOPHAN--TRNA-LIGASE-RXN == * common-name: ** tryptophan—trna ligase ** tryptophan-trna ligase * ec-number: ** [http://enzyme.expasy...")
(Created page with "Category:reaction == Reaction RXN66-320 == * ec-number: ** [http://enzyme.expasy.org/EC/5.3.3.5 ec-5.3.3.5] * direction: ** reversible == Reaction formula == * 1 5-ALPHA...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
== Reaction TRYPTOPHAN--TRNA-LIGASE-RXN ==
+
== Reaction RXN66-320 ==
* common-name:
 
** tryptophan—trna ligase
 
** tryptophan-trna ligase
 
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/6.1.1.2 ec-6.1.1.2]
+
** [http://enzyme.expasy.org/EC/5.3.3.5 ec-5.3.3.5]
 
* direction:
 
* direction:
** left-to-right
+
** reversible
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[ATP]][c] '''+''' 1 [[TRP]][c] '''+''' 1 [[TRP-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-TRP-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[5-ALPHA-CHOLESTA-724-DIEN-3-BETA-OL]][c] '''<=>''' 1 [[ZYMOSTEROL]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[E_subulatus_16974]]
+
* Gene: [[EsuFWS87_17]]
** Category: [[annotation]]
+
** Category: [[manual]]
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[reactions_add_esub]], Tool: [[unknown-tool]], Assignment: n.a, Comment: curation sterols (girard et al.)
* Gene: [[E_subulatus_16973]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_10693]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
* [[PWY66-4]], cholesterol biosynthesis III (via desmosterol):
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY66-341]], cholesterol biosynthesis I:
 +
** '''5''' reactions found over '''18''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[manual]]; source: [[reactions_add_esub]]; tool: [[curation]]; comment: curation sterols (girard et al.)
 
== External links  ==
 
== External links  ==
* DB : UNIPROT
+
* METANETX-RXN : MNXR109128
* ID : O84589
+
* RHEA:
{{#set: common-name=tryptophan&mdash;trna ligase|tryptophan-trna ligase}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34000 34000]
{{#set: ec-number=ec-6.1.1.2}}
+
* LIGAND-RXN:
{{#set: direction=left-to-right}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R04804 R04804]
{{#set: nb gene associated=3}}
+
{{#set: ec-number=ec-5.3.3.5}}
{{#set: nb pathway associated=1}}
+
{{#set: direction=reversible}}
{{#set: reconstruction category=annotation}}
+
{{#set: nb gene associated=1}}
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: nb pathway associated=2}}
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction category=manual}}
{{#set: reconstruction source=ectocarpus_subulatus}}
+
{{#set: reconstruction tool=curation}}
 +
{{#set: reconstruction comment=curation sterols (girard et al.)}}
 +
{{#set: reconstruction source=reactions_add_esub}}

Revision as of 15:22, 15 March 2021

Reaction RXN66-320

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY66-4, cholesterol biosynthesis III (via desmosterol):
    • 4 reactions found over 4 reactions in the full pathway
  • PWY66-341, cholesterol biosynthesis I:
    • 5 reactions found over 18 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR109128
  • RHEA:
  • LIGAND-RXN: