Difference between revisions of "RXN-1126"

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(Created page with "Category:reaction == Reaction RXN-9652 == * common-name: ** 3-oxo-dodecanoyl-[acyl-carrier protein] synthase ** 3-oxoacyl-[acyl-carrier-protein] synthase * ec-number: ** [...")
(Created page with "Category:reaction == Reaction RXN-1126 == * ec-number: ** [http://enzyme.expasy.org/EC/6.2.1.12 ec-6.2.1.12] * direction: ** left-to-right == Reaction formula == * 1 ATP...")
 
(One intermediate revision by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction RXN-9652 ==
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== Reaction RXN-1126 ==
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* common-name:
 
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** 3-oxo-dodecanoyl-[acyl-carrier protein] synthase
 
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** 3-oxoacyl-[acyl-carrier-protein] synthase
 
 
* ec-number:
 
* ec-number:
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** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
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** [http://enzyme.expasy.org/EC/6.2.1.12 ec-6.2.1.12]
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** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 
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** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
 
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[Decanoyl-ACPs]][c] '''+''' 1 [[MALONYL-COA]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-oxo-dodecanoyl-ACPs]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CO-A]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[CPD-676]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[CAFFEOYL-COA]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* Gene: [[E_subulatus_21143]]
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* Gene: [[E_subulatus_22266]]
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** Category: [[orthology]]
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** Category: [[annotation]]
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*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[E_subulatus_13004]]
 
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** Category: [[annotation]]
 
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[E_subulatus_13005]]
 
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** Category: [[annotation]]
 
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[E_subulatus_15037]]
 
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** Category: [[annotation]]
 
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[E_subulatus_08948]]
 
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** Category: [[annotation]]
 
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[E_subulatus_15038]]
 
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** Category: [[annotation]]
 
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[E_subulatus_13006]]
 
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** Category: [[annotation]]
 
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[E_subulatus_22265]]
 
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** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
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* [[PWY-5994]], palmitate biosynthesis (type I fatty acid synthase):
+
* [[PWY-8003]], trans-caffeate degradation (aerobic):
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** '''30''' reactions found over '''31''' reactions in the full pathway
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** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7398]], coumarins biosynthesis (engineered):
 +
** '''3''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-6673]], caffeoylglucarate biosynthesis:
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-1121]], suberin monomers biosynthesis:
 +
** '''7''' reactions found over '''20''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
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* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
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* METANETX-RXN : MNXR122925
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* METANETX-RXN : MNXR96446
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{{#set: common-name=3-oxo-dodecanoyl-[acyl-carrier protein] synthase|3-oxoacyl-[acyl-carrier-protein] synthase}}
+
* RHEA:
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{{#set: ec-number=ec-2.3.1.41|ec-2.3.1.85|ec-2.3.1.86}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=36300 36300]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01943 R01943]
 +
{{#set: ec-number=ec-6.2.1.12}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
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{{#set: nb gene associated=8}}
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{{#set: nb gene associated=1}}
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{{#set: nb pathway associated=1}}
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{{#set: nb pathway associated=4}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=ectocarpus_subulatus}}
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{{#set: reconstruction source=output_pantograph_a.taliana.aragem}}

Latest revision as of 19:41, 17 March 2021

Reaction RXN-1126

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-8003, trans-caffeate degradation (aerobic):
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7398, coumarins biosynthesis (engineered):
    • 3 reactions found over 13 reactions in the full pathway
  • PWY-6673, caffeoylglucarate biosynthesis:
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-1121, suberin monomers biosynthesis:
    • 7 reactions found over 20 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR96446
  • RHEA:
  • LIGAND-RXN:





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