Difference between revisions of "RXN-11667"

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(Created page with "Category:reaction == Reaction SUCCCOASYN-RXN == * common-name: ** succinyl-coa synthetase * ec-number: ** [http://enzyme.expasy.org/EC/6.2.1.5 ec-6.2.1.5] * direction: **...")
(Created page with "Category:reaction == Reaction RXN-10034 == * direction: ** left-to-right * ec_number: ** ec-3.1.3.84 == Reaction formula == * 1 CPD-10794[c] '''+''' 1 WATER[c] '''...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction SUCCCOASYN-RXN ==
+
== Reaction RXN-10034 ==
−
* common-name:
 
−
** succinyl-coa synthetase
 
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* ec-number:
 
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** [http://enzyme.expasy.org/EC/6.2.1.5 ec-6.2.1.5]
 
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
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* synonymous:
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* ec_number:
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** succinyl coa synthesis
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** ec-3.1.3.84
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** succinate thiokinase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[SUC]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[SUC-COA]][c]
+
* 1 [[CPD-10794]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ADENOSINE_DIPHOSPHATE_RIBOSE]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* Gene: [[E_subulatus_17383]]
 
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** Category: [[annotation]]
 
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[E_subulatus_00867]]
 
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** Category: [[annotation]]
 
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[E_subulatus_12371]]
 
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** Category: [[annotation]]
 
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[E_subulatus_17382]]
 
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** Category: [[annotation]]
 
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[E_subulatus_17381]]
 
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** Category: [[annotation]]
 
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[E_subulatus_02430]]
 
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** Category: [[annotation]]
 
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[E_subulatus_02431]]
 
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** Category: [[annotation]]
 
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-6689]], tRNA splicing I:
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* [[PWY-5538]], pyruvate fermentation to acetate VI:
+
** '''5''' reactions found over '''7''' reactions in the full pathway
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** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
 
−
** '''10''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6728]], methylaspartate cycle:
 
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** '''12''' reactions found over '''19''' reactions in the full pathway
 
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* [[P42-PWY]], incomplete reductive TCA cycle:
 
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** '''4''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-5392]], reductive TCA cycle II:
 
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** '''5''' reactions found over '''12''' reactions in the full pathway
 
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* [[P23-PWY]], reductive TCA cycle I:
 
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** '''9''' reactions found over '''12''' reactions in the full pathway
 
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* [[PWY-6969]], TCA cycle V (2-oxoglutarate synthase):
 
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** '''10''' reactions found over '''9''' reactions in the full pathway
 
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* [[TCA]], TCA cycle I (prokaryotic):
 
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** '''8''' reactions found over '''10''' reactions in the full pathway
 
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* [[PWY-5690]], TCA cycle II (plants and fungi):
 
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** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-5537]], pyruvate fermentation to acetate V:
 
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** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial):
 
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** '''8''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY66-398]], TCA cycle III (animals):
 
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** '''10''' reactions found over '''10''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
+
* category: [[manual]]; source: [[esub_adding_annot_form]]; tool: [[curation]]; comment: annotation
−
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR116282
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* METANETX-RXN : MNXR104635
 
 
* RHEA:
 
* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17664 17664]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25032 25032]
−
* LIGAND-RXN:
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{{#set: direction=left-to-right}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00405 R00405]
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{{#set: ec_number=ec-3.1.3.84}}
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* UNIPROT:
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{{#set: nb gene associated=0}}
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** [http://www.uniprot.org/uniprot/O28098 O28098]
+
{{#set: nb pathway associated=1}}
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** [http://www.uniprot.org/uniprot/P53594 P53594]
+
{{#set: reconstruction category=manual}}
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** [http://www.uniprot.org/uniprot/O28733 O28733]
+
{{#set: reconstruction tool=curation}}
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** [http://www.uniprot.org/uniprot/P45101 P45101]
+
{{#set: reconstruction comment=annotation}}
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** [http://www.uniprot.org/uniprot/P45102 P45102]
+
{{#set: reconstruction source=esub_adding_annot_form}}
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** [http://www.uniprot.org/uniprot/Q9JUT0 Q9JUT0]
 
−
** [http://www.uniprot.org/uniprot/Q58643 Q58643]
 
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** [http://www.uniprot.org/uniprot/O26663 O26663]
 
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** [http://www.uniprot.org/uniprot/P80886 P80886]
 
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** [http://www.uniprot.org/uniprot/Q9PHY1 Q9PHY1]
 
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** [http://www.uniprot.org/uniprot/Q9JUS9 Q9JUS9]
 
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** [http://www.uniprot.org/uniprot/P80865 P80865]
 
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** [http://www.uniprot.org/uniprot/Q9PHY0 Q9PHY0]
 
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** [http://www.uniprot.org/uniprot/O67729 O67729]
 
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** [http://www.uniprot.org/uniprot/O67546 O67546]
 
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** [http://www.uniprot.org/uniprot/P53593 P53593]
 
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** [http://www.uniprot.org/uniprot/P0AGE9 P0AGE9]
 
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** [http://www.uniprot.org/uniprot/P0A836 P0A836]
 
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** [http://www.uniprot.org/uniprot/O82662 O82662]
 
−
</div>
 
−
{{#set: common-name=succinyl-coa synthetase}}
 
−
{{#set: ec-number=ec-6.2.1.5}}
 
−
{{#set: direction=reversible}}
 
−
{{#set: synonymous=succinate thiokinase|succinyl coa synthesis}}
 
−
{{#set: nb gene associated=7}}
 
−
{{#set: nb pathway associated=12}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}
 

Revision as of 19:04, 17 March 2021

Reaction RXN-10034

  • direction:
    • left-to-right
  • ec_number:
    • ec-3.1.3.84

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6689, tRNA splicing I:
    • 5 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR116282
  • RHEA:





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