Difference between revisions of "RXN-7913"
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(Created page with "Category:reaction == Reaction RXN-7648 == * ec-number: ** [http://enzyme.expasy.org/EC/1.14.11.9 ec-1.14.11.9] * direction: ** left-to-right == Reaction formula == * 1 2...") |
(Created page with "Category:reaction == Reaction PYRIMSYN3-RXN == * common-name: ** phosphomethylpyrimidine kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.4.7 ec-2.7.4.7] * directio...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction PYRIMSYN3-RXN == |
+ | * common-name: | ||
+ | ** phosphomethylpyrimidine kinase | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/2.7.4.7 ec-2.7.4.7] |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[AMINO-HYDROXYMETHYL-METHYL-PYR-P]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[E_subulatus_05008]] |
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[E_subulatus_05007]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[E_subulatus_05009]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY-6890]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis I: |
− | ** '''3''' reactions found over ''' | + | ** '''1''' reactions found over '''2''' reactions in the full pathway |
+ | * [[PWY-7282]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis II: | ||
+ | ** '''6''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[PWY-7357]], thiamine phosphate formation from pyrithiamine and oxythiamine (yeast): | ||
+ | ** '''2''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-6910]], hydroxymethylpyrimidine salvage: | ||
+ | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-7356]], thiamine diphosphate salvage IV (yeast): | ||
+ | ** '''3''' reactions found over '''7''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
− | * METANETX-RXN : | + | * METANETX-RXN : MNXR103045 |
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19894 19894] | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R04509 R04509] |
− | {{#set: ec-number=ec- | + | * UNIPROT: |
+ | ** [http://www.uniprot.org/uniprot/Q9JTE1 Q9JTE1] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PNL2 Q9PNL2] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CI79 Q9CI79] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CG47 Q9CG47] | ||
+ | {{#set: common-name=phosphomethylpyrimidine kinase}} | ||
+ | {{#set: ec-number=ec-2.7.4.7}} | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=3}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=5}} |
− | {{#set: reconstruction category=orthology}} | + | {{#set: reconstruction category=annotation|orthology}} |
− | {{#set: reconstruction tool=pantograph}} | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=output_pantograph_a.taliana.aragem}} | + | {{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}} |
Revision as of 19:04, 17 March 2021
Contents
Reaction PYRIMSYN3-RXN
- common-name:
- phosphomethylpyrimidine kinase
- ec-number:
- direction:
- left-to-right
Reaction formula
- 1 AMINO-HYDROXYMETHYL-METHYL-PYR-P[c] + 1 ATP[c] => 1 ADP[c] + 1 AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP[c]
Gene(s) associated with this reaction
- Gene: E_subulatus_05008
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: E_subulatus_05007
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_a.taliana.aragem, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: E_subulatus_05009
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-6890, 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis I:
- 1 reactions found over 2 reactions in the full pathway
- PWY-7282, 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis II:
- 6 reactions found over 10 reactions in the full pathway
- PWY-7357, thiamine phosphate formation from pyrithiamine and oxythiamine (yeast):
- 2 reactions found over 6 reactions in the full pathway
- PWY-6910, hydroxymethylpyrimidine salvage:
- 1 reactions found over 2 reactions in the full pathway
- PWY-7356, thiamine diphosphate salvage IV (yeast):
- 3 reactions found over 7 reactions in the full pathway
Reconstruction information
- category: annotation; source: ectocarpus_subulatus; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_a.taliana.aragem; tool: pantograph; comment: n.a
External links