Difference between revisions of "RXN0-2301"

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(Created page with "Category:reaction == Reaction RXN-10706 == * common-name: ** acyl-coa oxidase * ec-number: ** [http://enzyme.expasy.org/EC/1.3.3.6 ec-1.3.3.6] * direction: ** left-to-righ...")
(Created page with "Category:reaction == Reaction HOMOCYSMETB12-RXN == * common-name: ** methionine synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.1.1.13 ec-2.1.1.13] * direction: **...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-10706 ==
+
== Reaction HOMOCYSMETB12-RXN ==
 
* common-name:
 
* common-name:
−
** acyl-coa oxidase
+
** methionine synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.3.3.6 ec-1.3.3.6]
+
** [http://enzyme.expasy.org/EC/2.1.1.13 ec-2.1.1.13]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-11521]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CPD-11522]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c]
+
* 1 [[5-METHYL-THF-GLU-N]][c] '''+''' 1 [[HOMO-CYS]][c] '''=>''' 1 [[MET]][c] '''+''' 1 [[THF-GLU-N]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_07244]]
+
* Gene: [[E_subulatus_08517]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_07246]]
+
* Gene: [[E_subulatus_03439]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_11079]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_07245]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-735]], jasmonic acid biosynthesis:
+
* [[PWY-2201]], folate transformations I:
−
** '''15''' reactions found over '''19''' reactions in the full pathway
+
** '''12''' reactions found over '''10''' reactions in the full pathway
 +
* [[ADENOSYLHOMOCYSCAT-PWY]], L-methionine salvage from L-homocysteine:
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[1CMET2-PWY]], folate transformations III (E. coli):
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7977]], L-methionine biosynthesis IV:
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-3841]], folate transformations II (plants):
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[HOMOSER-METSYN-PWY]], L-methionine biosynthesis I:
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[HSERMETANA-PWY]], L-methionine biosynthesis III:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR116480
+
* METANETX-RXN : MNXR115965
−
{{#set: common-name=acyl-coa oxidase}}
+
* RHEA:
−
{{#set: ec-number=ec-1.3.3.6}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11173 11173]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00946 R00946]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q57195 Q57195]
 +
** [http://www.uniprot.org/uniprot/Q9RVQ6 Q9RVQ6]
 +
** [http://www.uniprot.org/uniprot/O33259 O33259]
 +
** [http://www.uniprot.org/uniprot/Q55786 Q55786]
 +
** [http://www.uniprot.org/uniprot/Q09582 Q09582]
 +
** [http://www.uniprot.org/uniprot/Q9Z2Q4 Q9Z2Q4]
 +
** [http://www.uniprot.org/uniprot/P13009 P13009]
 +
{{#set: common-name=methionine synthase}}
 +
{{#set: ec-number=ec-2.1.1.13}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=7}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}

Revision as of 19:04, 17 March 2021

Reaction HOMOCYSMETB12-RXN

  • common-name:
    • methionine synthase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-2201, folate transformations I:
    • 12 reactions found over 10 reactions in the full pathway
  • ADENOSYLHOMOCYSCAT-PWY, L-methionine salvage from L-homocysteine:
    • 1 reactions found over 3 reactions in the full pathway
  • 1CMET2-PWY, folate transformations III (E. coli):
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7977, L-methionine biosynthesis IV:
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-3841, folate transformations II (plants):
    • 10 reactions found over 11 reactions in the full pathway
  • HOMOSER-METSYN-PWY, L-methionine biosynthesis I:
    • 5 reactions found over 5 reactions in the full pathway
  • HSERMETANA-PWY, L-methionine biosynthesis III:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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