Difference between revisions of "RXN1G-368"

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(Created page with "Category:reaction == Reaction RXN-16631 == * common-name: ** (3r,11z)-3-hydroxy-icos-11-enoyl-[acp] dehydratase * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.59 ec-4....")
(Created page with "Category:reaction == Reaction OXALODECARB-RXN == * common-name: ** oxaloacetate decarboxylase * ec-number: ** [http://enzyme.expasy.org/EC/4.1.1.112 ec-4.1.1.112] * direct...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-16631 ==
+
== Reaction OXALODECARB-RXN ==
 
* common-name:
 
* common-name:
−
** (3r,11z)-3-hydroxy-icos-11-enoyl-[acp] dehydratase
+
** oxaloacetate decarboxylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.59 ec-4.2.1.59]
+
** [http://enzyme.expasy.org/EC/4.1.1.112 ec-4.1.1.112]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[3R-11Z-3-hydroxy-icos-11-enoyl-ACPs]][c] '''=>''' 1 [[2E-11Z-icosa-2-11-dienoyl-ACPs]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PYRUVATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_18602]]
+
* Gene: [[E_subulatus_23248]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_23249]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_23247]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_23246]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_23250]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7663]], gondoate biosynthesis (anaerobic):
+
* [[P184-PWY]], protocatechuate degradation I (meta-cleavage pathway):
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''1''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6339]], syringate degradation:
 +
** '''1''' reactions found over '''9''' reactions in the full pathway
 +
* [[METHYLGALLATE-DEGRADATION-PWY]], methylgallate degradation:
 +
** '''1''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR120251
+
* METANETX-RXN : MNXR102097
−
{{#set: common-name=(3r,11z)-3-hydroxy-icos-11-enoyl-[acp] dehydratase}}
+
* RHEA:
−
{{#set: ec-number=ec-4.2.1.59}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15642 15642]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00217 R00217]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P13187 P13187]
 +
** [http://www.uniprot.org/uniprot/P13155 P13155]
 +
** [http://www.uniprot.org/uniprot/P13156 P13156]
 +
** [http://www.uniprot.org/uniprot/Q58628 Q58628]
 +
{{#set: common-name=oxaloacetate decarboxylase}}
 +
{{#set: ec-number=ec-4.1.1.112}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=5}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=3}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}

Revision as of 19:08, 17 March 2021

Reaction OXALODECARB-RXN

  • common-name:
    • oxaloacetate decarboxylase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P184-PWY, protocatechuate degradation I (meta-cleavage pathway):
    • 1 reactions found over 8 reactions in the full pathway
  • PWY-6339, syringate degradation:
    • 1 reactions found over 9 reactions in the full pathway
  • METHYLGALLATE-DEGRADATION-PWY, methylgallate degradation:
    • 1 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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