Difference between revisions of "ALANINE-AMINOTRANSFERASE-RXN"

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(Created page with "Category:reaction == Reaction RXN-16659 == * direction: ** left-to-right * common-name: ** peptidoglycan transpeptidase (gram-negative bacteria) ** serine-type d-ala-d-ala...")
 
(Created page with "Category:reaction == Reaction ALANINE-AMINOTRANSFERASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.6.1.2 ec-2.6.1.2] * direction: ** reversible == Reaction formu...")
 
(One intermediate revision by the same user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction RXN-16659 ==
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== Reaction ALANINE-AMINOTRANSFERASE-RXN ==
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* ec-number:
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** [http://enzyme.expasy.org/EC/2.6.1.2 ec-2.6.1.2]
 
* direction:
 
* direction:
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** left-to-right
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** reversible
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* common-name:
 
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** peptidoglycan transpeptidase (gram-negative bacteria)
 
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** serine-type d-ala-d-ala carboxypeptidase
 
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* ec-number:
 
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** [http://enzyme.expasy.org/EC/3.4.16.4 ec-3.4.16.4]
 
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[CPD-17927]][c] '''+''' 1 [[CPD-17931]][c] '''=>''' 1 [[CPD-17932]][c] '''+''' 1 [[D-ALANINE]][c]
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* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[L-ALPHA-ALANINE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[PYRUVATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
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* Gene: [[RUMFLAFD1_RS0100665]]
 
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** Category: [[annotation]]
 
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*** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
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* Gene: [[RUMFLAFD1_RS0105395]]
 
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** Category: [[annotation]]
 
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*** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
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* Gene: [[RUMFLAFD1_RS24360]]
 
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** Category: [[annotation]]
 
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*** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
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* [[PWY0-1586]], peptidoglycan maturation (meso-diaminopimelate containing):
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* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type:
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** '''12''' reactions found over '''12''' reactions in the full pathway
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** '''8''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type:
 +
** '''7''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-7383]], anaerobic energy metabolism (invertebrates, cytosol):
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[ALACAT2-PWY]], L-alanine degradation II (to D-lactate):
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[ALANINE-DEG3-PWY]], L-alanine degradation III:
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[ALANINE-SYN2-PWY]], L-alanine biosynthesis II:
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
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* category: [[annotation]]; source: [[genome_a]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[manual]]; source: [[rumino_rxn_add_gp]]; tool: [[curation]]; comment: added for gap-filling
 
== External links  ==
 
== External links  ==
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{{#set: direction=left-to-right}}
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* RHEA:
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{{#set: common-name=peptidoglycan transpeptidase (gram-negative bacteria)|serine-type d-ala-d-ala carboxypeptidase}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19456 19456]
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{{#set: ec-number=ec-3.4.16.4}}
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* LIGAND-RXN:
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{{#set: nb gene associated=3}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00258 R00258]
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{{#set: nb pathway associated=1}}
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* UNIPROT:
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{{#set: reconstruction category=annotation}}
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** [http://www.uniprot.org/uniprot/P13191 P13191]
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{{#set: reconstruction tool=pathwaytools}}
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** [http://www.uniprot.org/uniprot/P25409 P25409]
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{{#set: reconstruction comment=n.a}}
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** [http://www.uniprot.org/uniprot/P24298 P24298]
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{{#set: reconstruction source=genome_a}}
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** [http://www.uniprot.org/uniprot/Q9UR81 Q9UR81]
 +
** [http://www.uniprot.org/uniprot/P34106 P34106]
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** [http://www.uniprot.org/uniprot/P52894 P52894]
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** [http://www.uniprot.org/uniprot/Q42685 Q42685]
 +
{{#set: ec-number=ec-2.6.1.2}}
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{{#set: direction=reversible}}
 +
{{#set: nb gene associated=0}}
 +
{{#set: nb pathway associated=6}}
 +
{{#set: reconstruction category=manual}}
 +
{{#set: reconstruction tool=curation}}
 +
{{#set: reconstruction comment=added for gap-filling}}
 +
{{#set: reconstruction source=rumino_rxn_add_gp}}

Latest revision as of 17:47, 15 January 2021

Reaction ALANINE-AMINOTRANSFERASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7115, C4 photosynthetic carbon assimilation cycle, NAD-ME type:
    • 8 reactions found over 10 reactions in the full pathway
  • PWY-7117, C4 photosynthetic carbon assimilation cycle, PEPCK type:
    • 7 reactions found over 12 reactions in the full pathway
  • PWY-7383, anaerobic energy metabolism (invertebrates, cytosol):
    • 7 reactions found over 7 reactions in the full pathway
  • ALACAT2-PWY, L-alanine degradation II (to D-lactate):
    • 2 reactions found over 3 reactions in the full pathway
  • ALANINE-DEG3-PWY, L-alanine degradation III:
    • 1 reactions found over 1 reactions in the full pathway
  • ALANINE-SYN2-PWY, L-alanine biosynthesis II:
    • 1 reactions found over 1 reactions in the full pathway

Reconstruction information

External links





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