Difference between revisions of "GKI-RXN"

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(Created page with "Category:reaction == Reaction IGPSYN-RXN == * direction: ** left-to-right * common-name: ** indole-3-glycerol phosphate synthase trpc * ec-number: ** [http://enzyme.expasy...")
 
(Created page with "Category:reaction == Reaction GKI-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.165 ec-2.7.1.165] == Reaction formula == * 1 AT...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction IGPSYN-RXN ==
+
== Reaction GKI-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** indole-3-glycerol phosphate synthase trpc
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.1.48 ec-4.1.1.48]
+
** [http://enzyme.expasy.org/EC/2.7.1.165 ec-2.7.1.165]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CARBOXYPHENYLAMINO-DEOXYRIBULOSE-P]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[INDOLE-3-GLYCEROL-P]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[GLYCERATE]][c] '''=>''' 1 [[2-PG]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[RUMFLAFD1_RS0112365]]
+
* Gene: [[RUMFLAFD1_RS0103800]]
−
** Category: [[annotation]]
 
−
*** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ecoli]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ecoli]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[output_pantograph_bthetaiotaomicron_heinken2013]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_l_plantarum_wcfs1]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRPSYN-PWY]], L-tryptophan biosynthesis:
+
* [[PWY-1622]], formaldehyde assimilation I (serine pathway):
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''5''' reactions found over '''13''' reactions in the full pathway
 +
* [[GLUCARDEG-PWY]], D-glucarate degradation I:
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[NPGLUCAT-PWY]], Entner-Doudoroff pathway II (non-phosphorylative):
 +
** '''4''' reactions found over '''9''' reactions in the full pathway
 +
* [[GLYCOLATEMET-PWY]], glycolate and glyoxylate degradation I:
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[GALACTARDEG-PWY]], D-galactarate degradation I:
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY0-1300]], 2-O-α-mannosyl-D-glycerate degradation:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_l_plantarum_wcfs1]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[annotation]]; source: [[genome_a]]; tool: [[pathwaytools]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ecoli]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ecoli]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_bthetaiotaomicron_heinken2013]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23477 23477]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27378 27378]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03508 R03508]
+
** [http://www.genome.jp/dbget-bin/www_bget?R08572 R08572]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P42393 P42393]
 
−
** [http://www.uniprot.org/uniprot/P20577 P20577]
 
−
** [http://www.uniprot.org/uniprot/P18304 P18304]
 
−
** [http://www.uniprot.org/uniprot/Q06121 Q06121]
 
−
** [http://www.uniprot.org/uniprot/Q9V1G3 Q9V1G3]
 
−
** [http://www.uniprot.org/uniprot/P20578 P20578]
 
−
** [http://www.uniprot.org/uniprot/Q9PI11 Q9PI11]
 
−
** [http://www.uniprot.org/uniprot/Q58328 Q58328]
 
−
** [http://www.uniprot.org/uniprot/Q9JSN4 Q9JSN4]
 
−
** [http://www.uniprot.org/uniprot/P03964 P03964]
 
−
** [http://www.uniprot.org/uniprot/P00910 P00910]
 
−
** [http://www.uniprot.org/uniprot/P00909 P00909]
 
−
** [http://www.uniprot.org/uniprot/P00911 P00911]
 
−
** [http://www.uniprot.org/uniprot/P17217 P17217]
 
−
** [http://www.uniprot.org/uniprot/P20409 P20409]
 
−
** [http://www.uniprot.org/uniprot/P00937 P00937]
 
−
** [http://www.uniprot.org/uniprot/P00908 P00908]
 
−
** [http://www.uniprot.org/uniprot/P05328 P05328]
 
−
** [http://www.uniprot.org/uniprot/P06531 P06531]
 
−
** [http://www.uniprot.org/uniprot/P18483 P18483]
 
−
** [http://www.uniprot.org/uniprot/P25170 P25170]
 
−
** [http://www.uniprot.org/uniprot/P26938 P26938]
 
−
** [http://www.uniprot.org/uniprot/P24773 P24773]
 
−
** [http://www.uniprot.org/uniprot/Q01999 Q01999]
 
−
** [http://www.uniprot.org/uniprot/Q9YGB5 Q9YGB5]
 
−
** [http://www.uniprot.org/uniprot/Q9S591 Q9S591]
 
−
** [http://www.uniprot.org/uniprot/Q9X7C7 Q9X7C7]
 
−
** [http://www.uniprot.org/uniprot/Q92370 Q92370]
 
−
** [http://www.uniprot.org/uniprot/Q9ZFA7 Q9ZFA7]
 
−
** [http://www.uniprot.org/uniprot/P94327 P94327]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=indole-3-glycerol phosphate synthase trpc}}
+
{{#set: ec-number=ec-2.7.1.165}}
−
{{#set: ec-number=ec-4.1.1.48}}
 
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=6}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_bthetaiotaomicron_heinken2013|output_pantograph_l_plantarum_wcfs1|genome_a|output_pantograph_ecoli}}
+
{{#set: reconstruction source=output_pantograph_ecoli}}

Latest revision as of 17:49, 15 January 2021

Reaction GKI-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-1622, formaldehyde assimilation I (serine pathway):
    • 5 reactions found over 13 reactions in the full pathway
  • GLUCARDEG-PWY, D-glucarate degradation I:
    • 1 reactions found over 4 reactions in the full pathway
  • NPGLUCAT-PWY, Entner-Doudoroff pathway II (non-phosphorylative):
    • 4 reactions found over 9 reactions in the full pathway
  • GLYCOLATEMET-PWY, glycolate and glyoxylate degradation I:
    • 1 reactions found over 4 reactions in the full pathway
  • GALACTARDEG-PWY, D-galactarate degradation I:
    • 1 reactions found over 4 reactions in the full pathway
  • PWY0-1300, 2-O-α-mannosyl-D-glycerate degradation:
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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