Difference between revisions of "GKI-RXN"

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(Created page with "Category:reaction == Reaction SHIKIMATE-5-DEHYDROGENASE-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.25 ec-1.1.1.25] == Reaction...")
(Created page with "Category:reaction == Reaction GKI-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.165 ec-2.7.1.165] == Reaction formula == * 1 AT...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction SHIKIMATE-5-DEHYDROGENASE-RXN ==
+
== Reaction GKI-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.25 ec-1.1.1.25]
+
** [http://enzyme.expasy.org/EC/2.7.1.165 ec-2.7.1.165]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[3-DEHYDRO-SHIKIMATE]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[SHIKIMATE]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[GLYCERATE]][c] '''=>''' 1 [[2-PG]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[RUMFLAFD1_RS0106595]]
+
* Gene: [[RUMFLAFD1_RS0103800]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_faecalibacteriumprausnitziia2-165_heinken2014]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_bifidobacteriumadolescentisl2-32]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ecoli]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ecoli]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[output_pantograph_bthetaiotaomicron_heinken2013]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_l_plantarum_wcfs1]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate:
+
* [[PWY-1622]], formaldehyde assimilation I (serine pathway):
−
** '''6''' reactions found over '''5''' reactions in the full pathway
+
** '''5''' reactions found over '''13''' reactions in the full pathway
 +
* [[GLUCARDEG-PWY]], D-glucarate degradation I:
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[NPGLUCAT-PWY]], Entner-Doudoroff pathway II (non-phosphorylative):
 +
** '''4''' reactions found over '''9''' reactions in the full pathway
 +
* [[GLYCOLATEMET-PWY]], glycolate and glyoxylate degradation I:
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[GALACTARDEG-PWY]], D-galactarate degradation I:
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY0-1300]], 2-O-α-mannosyl-D-glycerate degradation:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[genome_a]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_bthetaiotaomicron_heinken2013]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ecoli]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ecoli]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_bifidobacteriumadolescentisl2-32]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_l_plantarum_wcfs1]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_faecalibacteriumprausnitziia2-165_heinken2014]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17739 17739]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27378 27378]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02413 R02413]
+
** [http://www.genome.jp/dbget-bin/www_bget?R08572 R08572]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P07547 P07547]
 
−
** [http://www.uniprot.org/uniprot/P08566 P08566]
 
−
** [http://www.uniprot.org/uniprot/Q58484 Q58484]
 
−
** [http://www.uniprot.org/uniprot/Q9PIA0 Q9PIA0]
 
−
** [http://www.uniprot.org/uniprot/P0A6D5 P0A6D5]
 
−
** [http://www.uniprot.org/uniprot/Q9CES7 Q9CES7]
 
−
** [http://www.uniprot.org/uniprot/Q44606 Q44606]
 
−
** [http://www.uniprot.org/uniprot/Q44608 Q44608]
 
−
** [http://www.uniprot.org/uniprot/Q44609 Q44609]
 
−
** [http://www.uniprot.org/uniprot/Q44610 Q44610]
 
−
** [http://www.uniprot.org/uniprot/Q44611 Q44611]
 
−
** [http://www.uniprot.org/uniprot/Q44612 Q44612]
 
−
** [http://www.uniprot.org/uniprot/P15770 P15770]
 
−
** [http://www.uniprot.org/uniprot/Q42947 Q42947]
 
−
** [http://www.uniprot.org/uniprot/O65917 O65917]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-1.1.1.25}}
+
{{#set: ec-number=ec-2.7.1.165}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=6}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_bifidobacteriumadolescentisl2-32|genome_a|output_pantograph_faecalibacteriumprausnitziia2-165_heinken2014|output_pantograph_ecoli|output_pantograph_l_plantarum_wcfs1|output_pantograph_bthetaiotaomicron_heinken2013}}
+
{{#set: reconstruction source=output_pantograph_ecoli}}

Latest revision as of 17:49, 15 January 2021

Reaction GKI-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-1622, formaldehyde assimilation I (serine pathway):
    • 5 reactions found over 13 reactions in the full pathway
  • GLUCARDEG-PWY, D-glucarate degradation I:
    • 1 reactions found over 4 reactions in the full pathway
  • NPGLUCAT-PWY, Entner-Doudoroff pathway II (non-phosphorylative):
    • 4 reactions found over 9 reactions in the full pathway
  • GLYCOLATEMET-PWY, glycolate and glyoxylate degradation I:
    • 1 reactions found over 4 reactions in the full pathway
  • GALACTARDEG-PWY, D-galactarate degradation I:
    • 1 reactions found over 4 reactions in the full pathway
  • PWY0-1300, 2-O-α-mannosyl-D-glycerate degradation:
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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