Difference between revisions of "ADENPHOSPHOR-RXN"

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(Created page with "Category:reaction == Reaction THREONINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** threonine--trna ligase * ec-number: ** [http://enzyme.expasy.or...")
 
(Created page with "Category:reaction == Reaction ADENPHOSPHOR-RXN == * direction: ** reversible * common-name: ** purine-nucleoside phosphorylase * ec-number: ** [http://enzyme.expasy.org/EC...")
 
(One intermediate revision by one other user not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction THREONINE--TRNA-LIGASE-RXN ==
+
== Reaction ADENPHOSPHOR-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** threonine--trna ligase
+
** purine-nucleoside phosphorylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.3 ec-6.1.1.3]
+
** [http://enzyme.expasy.org/EC/2.4.2.1 ec-2.4.2.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[THR]][c] '''+''' 1 [[THR-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-THR-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[ADENOSINE]][c] '''+''' 1 [[Pi]][c] '''<=>''' 1 [[ADENINE]][c] '''+''' 1 [[RIBOSE-1P]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[RUMFLAFD1_RS0102180]]
+
* Gene: [[RUMFLAFD1_RS0119780]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
*** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_faecalibacteriumprausnitziia2-165_heinken2014]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ecoli]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[RUMFLAFD1_RS0109375]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_l_plantarum_wcfs1]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging:
+
* [[PWY0-1296]], purine ribonucleosides degradation:
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[P121-PWY]], adenine and adenosine salvage I:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6609]], adenine and adenosine salvage III:
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5532]], nucleoside and nucleotide degradation (archaea):
 +
** '''5''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6611]], adenine and adenosine salvage V:
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[genome_a]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[genome_a]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_l_plantarum_wcfs1]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_faecalibacteriumprausnitziia2-165_heinken2014]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ecoli]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24625 24625]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27645 27645]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03663 R03663]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01561 R01561]
−
* UNIPROT:
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/O83809 O83809]
+
{{#set: common-name=purine-nucleoside phosphorylase}}
−
** [http://www.uniprot.org/uniprot/Q9JVA3 Q9JVA3]
+
{{#set: ec-number=ec-2.4.2.1}}
−
** [http://www.uniprot.org/uniprot/P56071 P56071]
+
{{#set: nb gene associated=2}}
−
** [http://www.uniprot.org/uniprot/O58430 O58430]
+
{{#set: nb pathway associated=5}}
−
** [http://www.uniprot.org/uniprot/P47615 P47615]
+
{{#set: reconstruction category=orthology|annotation}}
−
** [http://www.uniprot.org/uniprot/O05947 O05947]
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
−
** [http://www.uniprot.org/uniprot/Q9PIS3 Q9PIS3]
 
−
** [http://www.uniprot.org/uniprot/O67583 O67583]
 
−
** [http://www.uniprot.org/uniprot/O27504 O27504]
 
−
** [http://www.uniprot.org/uniprot/O51662 O51662]
 
−
** [http://www.uniprot.org/uniprot/Q9ZMV3 Q9ZMV3]
 
−
** [http://www.uniprot.org/uniprot/Q9Z7A0 Q9Z7A0]
 
−
** [http://www.uniprot.org/uniprot/Q9WZJ9 Q9WZJ9]
 
−
** [http://www.uniprot.org/uniprot/Q9CED2 Q9CED2]
 
−
** [http://www.uniprot.org/uniprot/P43014 P43014]
 
−
** [http://www.uniprot.org/uniprot/P46244 P46244]
 
−
** [http://www.uniprot.org/uniprot/P75225 P75225]
 
−
** [http://www.uniprot.org/uniprot/Q48989 Q48989]
 
−
** [http://www.uniprot.org/uniprot/P0A8M3 P0A8M3]
 
−
** [http://www.uniprot.org/uniprot/O04630 O04630]
 
−
** [http://www.uniprot.org/uniprot/P18255 P18255]
 
−
** [http://www.uniprot.org/uniprot/P18256 P18256]
 
−
** [http://www.uniprot.org/uniprot/P04801 P04801]
 
−
** [http://www.uniprot.org/uniprot/P07236 P07236]
 
−
** [http://www.uniprot.org/uniprot/P26639 P26639]
 
−
</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=threonine--trna ligase}}
 
−
{{#set: ec-number=ec-6.1.1.3}}
 
−
{{#set: nb gene associated=1}}
 
−
{{#set: nb pathway associated=1}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=genome_a}}
+
{{#set: reconstruction source=output_pantograph_ecoli|genome_a|output_pantograph_l_plantarum_wcfs1|output_pantograph_faecalibacteriumprausnitziia2-165_heinken2014}}

Latest revision as of 17:50, 15 January 2021

Reaction ADENPHOSPHOR-RXN

  • direction:
    • reversible
  • common-name:
    • purine-nucleoside phosphorylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-1296, purine ribonucleosides degradation:
    • 6 reactions found over 6 reactions in the full pathway
  • P121-PWY, adenine and adenosine salvage I:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6609, adenine and adenosine salvage III:
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-5532, nucleoside and nucleotide degradation (archaea):
    • 5 reactions found over 10 reactions in the full pathway
  • PWY-6611, adenine and adenosine salvage V:
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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