Difference between revisions of "2TRANSKETO-RXN"

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(Created page with "Category:reaction == Reaction ACONITATEDEHYDR-RXN == * direction: ** reversible * common-name: ** aconitate hydratase == Reaction formula == * 1 CIT[c] '''<=>''' 1 C...")
 
(Created page with "Category:reaction == Reaction 2TRANSKETO-RXN == * direction: ** reversible * common-name: ** transketolase * ec-number: ** [http://enzyme.expasy.org/EC/2.2.1.1 ec-2.2.1.1]...")
 
(One intermediate revision by one other user not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ACONITATEDEHYDR-RXN ==
+
== Reaction 2TRANSKETO-RXN ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
−
** aconitate hydratase
+
** transketolase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/2.2.1.1 ec-2.2.1.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CIT]][c] '''<=>''' 1 [[CIS-ACONITATE]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[ERYTHROSE-4P]][c] '''+''' 1 [[XYLULOSE-5-PHOSPHATE]][c] '''<=>''' 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[GAP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[RUMFLAFD1_RS0117200]]
+
* Gene: [[RUMFLAFD1_RS0119380]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[RUMFLAFD1_RS0119375]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
*** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_bifidobacteriumadolescentisl2-32]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_bifidobacteriumadolescentisl2-32]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ecoli]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_bthetaiotaomicron_heinken2013]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_bthetaiotaomicron_heinken2013]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_l_plantarum_wcfs1]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle:
−
* [[PWY-6728]], methylaspartate cycle:
+
** '''9''' reactions found over '''13''' reactions in the full pathway
−
** '''7''' reactions found over '''19''' reactions in the full pathway
+
* [[PWY-5723]], Rubisco shunt:
−
* [[PWY-7124]], ethylene biosynthesis V (engineered):
+
** '''7''' reactions found over '''10''' reactions in the full pathway
−
** '''7''' reactions found over '''8''' reactions in the full pathway
+
* [[PWY-1861]], formaldehyde assimilation II (assimilatory RuMP Cycle):
−
* [[P23-PWY]], reductive TCA cycle I:
 
−
** '''6''' reactions found over '''12''' reactions in the full pathway
 
−
* [[REDCITCYC]], TCA cycle VIII (Helicobacter):
 
−
** '''4''' reactions found over '''9''' reactions in the full pathway
 
−
* [[TCA]], TCA cycle I (prokaryotic):
 
−
** '''5''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-5392]], reductive TCA cycle II:
 
−
** '''4''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY66-398]], TCA cycle III (animals):
 
−
** '''4''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-6549]], L-glutamine biosynthesis III:
 
 
** '''6''' reactions found over '''9''' reactions in the full pathway
 
** '''6''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-5750]], itaconate biosynthesis I:
+
* [[PWY-6901]], superpathway of glucose and xylose degradation:
−
** '''3''' reactions found over '''2''' reactions in the full pathway
+
** '''8''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-5690]], TCA cycle II (plants and fungi):
+
* [[P21-PWY]], pentose phosphate pathway (partial):
−
** '''4''' reactions found over '''9''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[FERMENTATION-PWY]], mixed acid fermentation:
+
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch):
−
** '''11''' reactions found over '''16''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
−
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle:
+
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle):
−
** '''4''' reactions found over '''6''' reactions in the full pathway
+
** '''9''' reactions found over '''12''' reactions in the full pathway
−
* [[PWY-7254]], TCA cycle VII (acetate-producers):
 
−
** '''4''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
 
−
** '''5''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
 
−
** '''7''' reactions found over '''11''' reactions in the full pathway
 
−
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase):
 
−
** '''5''' reactions found over '''11''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ecoli]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_l_plantarum_wcfs1]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_bifidobacteriumadolescentisl2-32]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[genome_a]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[genome_a]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_bthetaiotaomicron_heinken2013]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_bthetaiotaomicron_heinken2013]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_bifidobacteriumadolescentisl2-32]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10231 10231]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27629 27629]
−
* PIR:
+
* LIGAND-RXN:
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A35544 A35544]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01830 R01830]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44153 A44153]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01067 R01067]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44154 A44154]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A47184 A47184]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81801 A81801]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B48642 B48642]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64362 C64362]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64617 C64617]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C81356 C81356]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F64734 F64734]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F70873 F70873]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G64875 G64875]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69599 G69599]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G86708 G86708]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81775 H81775]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17526 S17526]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S18720 S18720]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26403 S26403]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S49849 S49849]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S50387 S50387]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57528 S57528]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57805 S57805]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S76777 S76777]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04693 T04693]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04820 T04820]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07611 T07611]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T10101 T10101]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52543 T52543]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P16276 P16276]
+
** [http://www.uniprot.org/uniprot/P22976 P22976]
−
** [http://www.uniprot.org/uniprot/Q01059 Q01059]
+
** [http://www.uniprot.org/uniprot/P29401 P29401]
−
** [http://www.uniprot.org/uniprot/Q9TSA1 Q9TSA1]
+
** [http://www.uniprot.org/uniprot/P33570 P33570]
−
** [http://www.uniprot.org/uniprot/Q9JTI5 Q9JTI5]
+
** [http://www.uniprot.org/uniprot/P21725 P21725]
−
** [http://www.uniprot.org/uniprot/P37032 P37032]
+
** [http://www.uniprot.org/uniprot/Q58094 Q58094]
−
** [http://www.uniprot.org/uniprot/P81291 P81291]
+
** [http://www.uniprot.org/uniprot/Q9JTR1 Q9JTR1]
−
** [http://www.uniprot.org/uniprot/Q9PP88 Q9PP88]
+
** [http://www.uniprot.org/uniprot/Q9CF56 Q9CF56]
−
** [http://www.uniprot.org/uniprot/P36683 P36683]
+
** [http://www.uniprot.org/uniprot/P21726 P21726]
−
** [http://www.uniprot.org/uniprot/O53166 O53166]
+
** [http://www.uniprot.org/uniprot/P47312 P47312]
−
** [http://www.uniprot.org/uniprot/P25516 P25516]
+
** [http://www.uniprot.org/uniprot/Q9PM31 Q9PM31]
−
** [http://www.uniprot.org/uniprot/P09339 P09339]
+
** [http://www.uniprot.org/uniprot/P43757 P43757]
−
** [http://www.uniprot.org/uniprot/Q9CHQ5 Q9CHQ5]
+
** [http://www.uniprot.org/uniprot/Q58092 Q58092]
−
** [http://www.uniprot.org/uniprot/Q9JT05 Q9JT05]
+
** [http://www.uniprot.org/uniprot/P45694 P45694]
−
** [http://www.uniprot.org/uniprot/Q99798 Q99798]
+
** [http://www.uniprot.org/uniprot/Q52723 Q52723]
−
** [http://www.uniprot.org/uniprot/P28271 P28271]
+
** [http://www.uniprot.org/uniprot/Q9Z475 Q9Z475]
−
** [http://www.uniprot.org/uniprot/P21399 P21399]
+
** [http://www.uniprot.org/uniprot/P34736 P34736]
−
** [http://www.uniprot.org/uniprot/Q42669 Q42669]
+
** [http://www.uniprot.org/uniprot/P33315 P33315]
−
** [http://www.uniprot.org/uniprot/P19414 P19414]
+
** [http://www.uniprot.org/uniprot/Q42675 Q42675]
−
** [http://www.uniprot.org/uniprot/P20004 P20004]
+
** [http://www.uniprot.org/uniprot/Q42676 Q42676]
−
** [http://www.uniprot.org/uniprot/P49609 P49609]
+
** [http://www.uniprot.org/uniprot/Q42677 Q42677]
−
** [http://www.uniprot.org/uniprot/P74582 P74582]
+
** [http://www.uniprot.org/uniprot/P46708 P46708]
−
** [http://www.uniprot.org/uniprot/Q42560 Q42560]
+
** [http://www.uniprot.org/uniprot/P75611 P75611]
−
** [http://www.uniprot.org/uniprot/Q9SZ36 Q9SZ36]
+
** [http://www.uniprot.org/uniprot/P73282 P73282]
−
** [http://www.uniprot.org/uniprot/O04916 O04916]
+
** [http://www.uniprot.org/uniprot/Q49047 Q49047]
−
* LIGAND-RXN:
+
** [http://www.uniprot.org/uniprot/O20250 O20250]
−
** [http://www.genome.jp/dbget-bin/www_bget?R01325 R01325]
+
** [http://www.uniprot.org/uniprot/O78327 O78327]
 +
** [http://www.uniprot.org/uniprot/Q9URM2 Q9URM2]
 +
** [http://www.uniprot.org/uniprot/Q9RFB7 Q9RFB7]
 +
** [http://www.uniprot.org/uniprot/P23254 P23254]
 +
** [http://www.uniprot.org/uniprot/P27302 P27302]
 +
** [http://www.uniprot.org/uniprot/P29277 P29277]
 
</div>
 
</div>
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=aconitate hydratase}}
+
{{#set: common-name=transketolase}}
−
{{#set: nb gene associated=1}}
+
{{#set: ec-number=ec-2.2.1.1}}
−
{{#set: nb pathway associated=16}}
+
{{#set: nb gene associated=2}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: nb pathway associated=7}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_bthetaiotaomicron_heinken2013|output_pantograph_bifidobacteriumadolescentisl2-32|genome_a}}
+
{{#set: reconstruction source=genome_a|output_pantograph_bifidobacteriumadolescentisl2-32|output_pantograph_ecoli|output_pantograph_l_plantarum_wcfs1|output_pantograph_bthetaiotaomicron_heinken2013}}

Latest revision as of 17:50, 15 January 2021

Reaction 2TRANSKETO-RXN

  • direction:
    • reversible
  • common-name:
    • transketolase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • CALVIN-PWY, Calvin-Benson-Bassham cycle:
    • 9 reactions found over 13 reactions in the full pathway
  • PWY-5723, Rubisco shunt:
    • 7 reactions found over 10 reactions in the full pathway
  • PWY-1861, formaldehyde assimilation II (assimilatory RuMP Cycle):
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-6901, superpathway of glucose and xylose degradation:
    • 8 reactions found over 8 reactions in the full pathway
  • P21-PWY, pentose phosphate pathway (partial):
    • 3 reactions found over 3 reactions in the full pathway
  • NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch):
    • 4 reactions found over 5 reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle):
    • 9 reactions found over 12 reactions in the full pathway

Reconstruction information

External links





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