Difference between revisions of "2TRANSKETO-RXN"
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(Created page with "Category:reaction == Reaction DUDPKIN-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6] == Reaction formula == * 1 AT...") |
(Created page with "Category:reaction == Reaction 2TRANSKETO-RXN == * direction: ** reversible * common-name: ** transketolase * ec-number: ** [http://enzyme.expasy.org/EC/2.2.1.1 ec-2.2.1.1]...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction 2TRANSKETO-RXN == |
* direction: | * direction: | ||
− | ** | + | ** reversible |
+ | * common-name: | ||
+ | ** transketolase | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/2. | + | ** [http://enzyme.expasy.org/EC/2.2.1.1 ec-2.2.1.1] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[ERYTHROSE-4P]][c] '''+''' 1 [[XYLULOSE-5-PHOSPHATE]][c] '''<=>''' 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[GAP]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[RUMFLAFD1_RS0119380]] |
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a | ||
+ | * Gene: [[RUMFLAFD1_RS0119375]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_bifidobacteriumadolescentisl2-32]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ecoli]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ecoli]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_bthetaiotaomicron_heinken2013]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_l_plantarum_wcfs1]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: |
− | ** ''' | + | ** '''9''' reactions found over '''13''' reactions in the full pathway |
− | * [[ | + | * [[PWY-5723]], Rubisco shunt: |
− | ** ''' | + | ** '''7''' reactions found over '''10''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-1861]], formaldehyde assimilation II (assimilatory RuMP Cycle): |
− | ** '''9''' reactions found over ''' | + | ** '''6''' reactions found over '''9''' reactions in the full pathway |
+ | * [[PWY-6901]], superpathway of glucose and xylose degradation: | ||
+ | ** '''8''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[P21-PWY]], pentose phosphate pathway (partial): | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): | ||
+ | ** '''4''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): | ||
+ | ** '''9''' reactions found over '''12''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ecoli]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_l_plantarum_wcfs1]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_bifidobacteriumadolescentisl2-32]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[genome_a]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[genome_a]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * category: [[orthology]]; source: [[ | + | * category: [[orthology]]; source: [[output_pantograph_bthetaiotaomicron_heinken2013]]; tool: [[pantograph]]; comment: n.a |
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27629 27629] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R01830 R01830] |
− | {{#set: direction= | + | ** [http://www.genome.jp/dbget-bin/www_bget?R01067 R01067] |
− | {{#set: ec-number=ec-2. | + | * UNIPROT: |
− | {{#set: nb gene associated= | + | ** [http://www.uniprot.org/uniprot/P22976 P22976] |
− | {{#set: nb pathway associated= | + | ** [http://www.uniprot.org/uniprot/P29401 P29401] |
+ | ** [http://www.uniprot.org/uniprot/P33570 P33570] | ||
+ | ** [http://www.uniprot.org/uniprot/P21725 P21725] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58094 Q58094] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JTR1 Q9JTR1] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CF56 Q9CF56] | ||
+ | ** [http://www.uniprot.org/uniprot/P21726 P21726] | ||
+ | ** [http://www.uniprot.org/uniprot/P47312 P47312] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PM31 Q9PM31] | ||
+ | ** [http://www.uniprot.org/uniprot/P43757 P43757] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58092 Q58092] | ||
+ | ** [http://www.uniprot.org/uniprot/P45694 P45694] | ||
+ | ** [http://www.uniprot.org/uniprot/Q52723 Q52723] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9Z475 Q9Z475] | ||
+ | ** [http://www.uniprot.org/uniprot/P34736 P34736] | ||
+ | ** [http://www.uniprot.org/uniprot/P33315 P33315] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42675 Q42675] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42676 Q42676] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42677 Q42677] | ||
+ | ** [http://www.uniprot.org/uniprot/P46708 P46708] | ||
+ | ** [http://www.uniprot.org/uniprot/P75611 P75611] | ||
+ | ** [http://www.uniprot.org/uniprot/P73282 P73282] | ||
+ | ** [http://www.uniprot.org/uniprot/Q49047 Q49047] | ||
+ | ** [http://www.uniprot.org/uniprot/O20250 O20250] | ||
+ | ** [http://www.uniprot.org/uniprot/O78327 O78327] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9URM2 Q9URM2] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9RFB7 Q9RFB7] | ||
+ | ** [http://www.uniprot.org/uniprot/P23254 P23254] | ||
+ | ** [http://www.uniprot.org/uniprot/P27302 P27302] | ||
+ | ** [http://www.uniprot.org/uniprot/P29277 P29277] | ||
+ | </div> | ||
+ | {{#set: direction=reversible}} | ||
+ | {{#set: common-name=transketolase}} | ||
+ | {{#set: ec-number=ec-2.2.1.1}} | ||
+ | {{#set: nb gene associated=2}} | ||
+ | {{#set: nb pathway associated=7}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
{{#set: reconstruction tool=pathwaytools|pantograph}} | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=output_pantograph_ecoli| | + | {{#set: reconstruction source=genome_a|output_pantograph_bifidobacteriumadolescentisl2-32|output_pantograph_ecoli|output_pantograph_l_plantarum_wcfs1|output_pantograph_bthetaiotaomicron_heinken2013}} |
Latest revision as of 17:50, 15 January 2021
Contents
Reaction 2TRANSKETO-RXN
- direction:
- reversible
- common-name:
- transketolase
- ec-number:
Reaction formula
- 1 ERYTHROSE-4P[c] + 1 XYLULOSE-5-PHOSPHATE[c] <=> 1 FRUCTOSE-6P[c] + 1 GAP[c]
Gene(s) associated with this reaction
- Gene: RUMFLAFD1_RS0119380
- Category: annotation
- Source: genome_a, Tool: pathwaytools, Assignment: automated-name-match, Comment: n.a
- Category: annotation
- Gene: RUMFLAFD1_RS0119375
- Category: annotation
- Source: genome_a, Tool: pathwaytools, Assignment: automated-name-match, Comment: n.a
- Category: orthology
- Source: output_pantograph_bifidobacteriumadolescentisl2-32, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ecoli, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_bthetaiotaomicron_heinken2013, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_l_plantarum_wcfs1, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- CALVIN-PWY, Calvin-Benson-Bassham cycle:
- 9 reactions found over 13 reactions in the full pathway
- PWY-5723, Rubisco shunt:
- 7 reactions found over 10 reactions in the full pathway
- PWY-1861, formaldehyde assimilation II (assimilatory RuMP Cycle):
- 6 reactions found over 9 reactions in the full pathway
- PWY-6901, superpathway of glucose and xylose degradation:
- 8 reactions found over 8 reactions in the full pathway
- P21-PWY, pentose phosphate pathway (partial):
- 3 reactions found over 3 reactions in the full pathway
- NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch):
- 4 reactions found over 5 reactions in the full pathway
- P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle):
- 9 reactions found over 12 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ecoli; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_l_plantarum_wcfs1; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_bifidobacteriumadolescentisl2-32; tool: pantograph; comment: n.a
- category: annotation; source: genome_a; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_bthetaiotaomicron_heinken2013; tool: pantograph; comment: n.a
External links