Difference between revisions of "PWY-3861"
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Download '''AuReMe''' Input/Output [LINK OR MEDIA data] | Download '''AuReMe''' Input/Output [LINK OR MEDIA data] | ||
− | The automatic reconstruction of '' | + | The automatic reconstruction of '' Ruminococcus flavefaciens'' results to a Genome scale [[MEDIA:model.xml|Model]] containing 1445 reactions, 1390 metabolites, 828 genes and 763 pathways. This GeM was obtained based on the following sources: |
* Based on annotation data: | * Based on annotation data: | ||
** Creation of a metabolic network containing 919 reactions | ** Creation of a metabolic network containing 919 reactions | ||
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** Download this [[MEDIA:Reaction_creator.csv|form]] | ** Download this [[MEDIA:Reaction_creator.csv|form]] | ||
* '''Follow the examples given in the form(s) to correctly share your suggestions''' | * '''Follow the examples given in the form(s) to correctly share your suggestions''' | ||
− | * Send the filled form(s) to: | + | * Send the filled form(s) to: jeanne.got[at]irisa.fr |
Revision as of 10:45, 9 March 2020
description
Automatic reconstruction with AuReMe
Model summary: summary
Download AuReMe Input/Output [LINK OR MEDIA data]
The automatic reconstruction of Ruminococcus flavefaciens results to a Genome scale Model containing 1445 reactions, 1390 metabolites, 828 genes and 763 pathways. This GeM was obtained based on the following sources:
- Based on annotation data:
- Creation of a metabolic network containing 919 reactions
- Based on orthology data:
- Creation of a global metabolic network containing 676 reactions
- From template faecalibacteriumprausnitziia2-165_heinken2014 creation of a metabolic network containing: 315 reactions
- From template l_plantarum_wcfs1 creation of a metabolic network containing: 211 reactions
- From template bthetaiotaomicron_heinken2013 creation of a metabolic network containing: 296 reactions
- From template ecoli creation of a metabolic network containing: 448 reactions
- From template bifidobacteriumadolescentisl2-32 creation of a metabolic network containing: 214 reactions
- Creation of a global metabolic network containing 676 reactions
- Based on expertise:
- 110 reaction(s) added
- List of tools used:
- Tool: PathwayTools
- Tool: Pantograph